myRT

myRT report for GCA_000747625.2_ASM74762v2

Download annotations/find similar RTs

Seq: JQDQ01000239.1 Smithella sp. SCADC Smithella_SCADC_Contig_91, whole genome shotgun sequence (36784 bp)
Overview 1 RT 1: 6294-17253 bp Neighborhood of RT #1 [6294, 17285] AbiEii COG5340 RVT-UG1 HsdM Unstab_antitox Feature: gene Location: 6294-7127 bp Ori: KFO66353.1 Feature: domain Description: AbiEii Location: 6384-7086 bp Feature: domain Description: AbiEii Location: 6384-7086 bp Feature: gene Location: 7124-7897 bp Ori: KFO66354.1 Feature: domain Description: COG5340 Location: 7181-7886 bp Feature: domain Description: COG5340 Location: 71 81 -7886 bp Feature: gene Location: 8238-12050 bp Ori: KFO66355.1 Feature: RT Description: RVT-UG1 Note: UG1 RT Location: 8859-9339 bp Feature: RT Description: RVT-UG1 Note: UG1 RT Location: 8859-9339 bp Feature: gene Location: 13342-16017 bp Ori: KFO66356.1 Feature: domain Description: HsdM Location: 13369-15286 bp Feature: domain Description: HsdM Location: 1 3369-1 5286 bp Feature: gene Location: 17058-17285 bp Ori: KFO66357.1 Feature: domain Description: Unstab_antitox Location: 17100-17253 bp Feature: domain Description: Unstab_antitox Location: 1 71 00-1 7253 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT AbiEii (pfam08843), COG5340 (Transcriptional regulator, predicted component of viral defense system ), RVT-UG1, HsdM (COG0286), Unstab_antitox (pfam09720)

Seq: JQDQ01000138.1 Smithella sp. SCADC Smithella_SCADC_Contig_228, whole genome shotgun sequence (1918 bp)
Overview 1 RT 1: 574-1735 bp Neighborhood of RT #1 [574, 1812] RVT-GII GIIM Feature: gene Location: 574-1812 bp Ori: KFO67813.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 778-1435 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 778-1435 bp Feature: domain Description: GIIM Note: maturase Location: 1516-1735 bp Feature: domain Description: GIIM Note: maturase Location: 1516-1735 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: JQDQ01000122.1 Smithella sp. SCADC Smithella_SCADC_Contig_213, whole genome shotgun sequence (6248 bp)
Overview 1 RT 1: 360-6248 bp Neighborhood of RT #1 [360, 6248] COG3392 Endonuc-EcoRV RVT-GII DapC_direct Feature: gene Location: 360-1439 bp Ori: KFO67976.1 Feature: domain Description: COG3392 Location: 438-1389 bp Feature: domain Description: COG3 3 92 Location: 43 8-13 89 bp Feature: gene Location: 1439-2185 bp Ori: KFO67977.1 Feature: domain Description: Endonuc-EcoRV Location: 1469-2177 bp Feature: domain Description: Endonuc-EcoRV Location: 1469-2177 bp Feature: gene Location: 3668-4102 bp Ori: KFO67978.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3989-4094 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3 989-4094 bp Feature: gene Location: 4544-5716 bp Ori: KFO67979.1 Feature: domain Description: DapC_direct Location: 4553-5699 bp Feature: domain Description: DapC_direct Location: 4553 -5699 bp Feature: gene Location: 5852-6248 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3392 (Adenine-specific DNA methylase ), Endonuc-EcoRV (pfam09233), RVT-GII, DapC_direct (TIGR03540)

Seq: JQDQ01000127.1 Smithella sp. SCADC Smithella_SCADC_Contig_218, whole genome shotgun sequence (1477 bp)
Overview 1 RT 1: 1-946 bp Neighborhood of RT #1 [1, 1023] RVT-GII Feature: gene Location: 1-1023 bp Ori: KFO67897.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 256-946 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 256-94 6 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII