myRT

myRT report for GCA_000749845.1_ASM74984v1

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Seq: JQHM01000009.1 Pectobacterium betavasculorum strain NCPPB 2795 ID_17, whole genome shotgun sequence (121513 bp)
Overview 1 RT 1: 34897-37532 bp Neighborhood of RT #1 [34897, 37777] InsE RVT-GII GIIM Feature: gene Location: 34897-35214 bp Feature: domain Description: InsE Location: 34909-35185 bp Feature: domain Description: InsE Location: 34909-351 85 bp Feature: gene Location: 35234-35419 bp Feature: gene Location: 36254-37777 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 36527-37259 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 36527-37259 bp Feature: domain Description: GIIM Note: maturase Location: 37355-37532 bp Feature: domain Description: GIIM Note: maturase Location: 37355-37532 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT InsE (COG2963), RVT-GII, GIIM (pfam08388)

Seq: JQHM01000010.1 Pectobacterium betavasculorum strain NCPPB 2795 ID_19, whole genome shotgun sequence (104524 bp)
Overview 1 RT 1: 29459-35672 bp Neighborhood of RT #1 [29459, 36175] HipB ImmA HTH_MARR RVT-Retrons BamE LPAM_1 Feature: gene Location: 29459-30571 bp Feature: domain Description: HipB Location: 29471-29684 bp Feature: domain Description: HipB Location: 2 9471-2 9684 bp Feature: domain Description: ImmA Location: 29852-30377 bp Feature: domain Description: ImmA Location: 2 9852 -30377 bp Feature: gene Location: 30756-31490 bp Feature: domain Description: HTH_MARR Location: 30945-31119 bp Feature: domain Description: HTH_MARR Location: 30945-31119 bp Feature: gene Location: 32509-34227 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 32647-33271 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 32 647-332 71 bp Feature: gene Location: 34615-34992 bp Feature: domain Description: BamE Location: 34630-34945 bp Feature: domain Description: BamE Location: 34630-34945 bp Feature: gene Location: 35621-36175 bp Feature: domain Description: LPAM_1 Location: 35624-35672 bp Feature: domain Description: LPAM_1 Location: 3562 4-35672 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HipB (COG1396), ImmA (COG2856), HTH_MARR (smart00347), RVT-Retrons, BamE (COG2913), LPAM_1 (pfam08139)

Seq: JQHM01000002.1 Pectobacterium betavasculorum strain NCPPB 2795 ID_3, whole genome shotgun sequence (571891 bp)
Overview 1 RT 1: 295628-299338 bp Neighborhood of RT #1 [295628, 299529] RVT-Retrons AbiEii COG5340 Feature: gene Location: 295628-295990 bp Feature: gene Location: 296092-296271 bp Feature: gene Location: 296261-297286 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 296483-297029 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 296483 -297029 bp Feature: gene Location: 298083-299000 bp Feature: domain Description: AbiEii Location: 298191-298929 bp Feature: domain Description: AbiEii Location: 298191-298929 bp Feature: gene Location: 298984-299529 bp Feature: domain Description: COG5340 Location: 298999-299338 bp Feature: domain Description: COG53 40 Location: 298999-2993 3 8 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-Retrons, AbiEii (pfam08843), COG5340 (Transcriptional regulator, predicted component of viral defense system )