myRT

myRT report for GCA_000749865.1_ASM74986v1

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Seq: JQHP01000004.1 Pectobacterium wasabiae strain NCPPB 3701 ID_7, whole genome shotgun sequence (453151 bp)
Overview 1 RT 1: 56587-61064 bp Neighborhood of RT #1 [56587, 61064] PRK13889 RVT-Retrons HTH_XRE Feature: gene Location: 56587-57174 bp Feature: gene Location: 57805-59307 bp Ori: KFX08046.1 Feature: domain Description: PRK13889 Location: 57808-58387 bp Feature: domain Description: PRK1 3889 Location: 57808-58387 bp Feature: gene Location: 59384-60484 bp Ori: KFX08047.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 59525-60077 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 59525-60077 bp Feature: gene Location: 60477-60758 bp Ori: KFX08048.1 Feature: domain Description: HTH_XRE Location: 60492-60657 bp Feature: domain Description: HTH_XRE Location: 60492-60657 bp Feature: gene Location: 60849-61064 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK13889 (conjugal transfer relaxase TraA; Provisional), RVT-Retrons, HTH_XRE (smart00530)

Seq: JQHP01000002.1 Pectobacterium wasabiae strain NCPPB 3701 ID_3, whole genome shotgun sequence (622793 bp)
Overview 1 RT 1: 539417-547334 bp Neighborhood of RT #1 [539417, 547369] TIGR02646 COG3950 RVT-Retrons SufI proA Feature: gene Location: 539417-540199 bp Ori: KFX09270.1 Feature: domain Description: TIGR02646 Location: 539495-540023 bp Feature: domain Description: TIGR02 646 Location: 539495-54002 3 bp Feature: gene Location: 540180-541805 bp Ori: KFX09271.1 Feature: domain Description: COG3950 Location: 540363-541689 bp Feature: domain Description: COG3950 Location: 540363-541689 bp Feature: gene Location: 541783-542745 bp Ori: KFX09272.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 541882-542479 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 541882 -542 479 bp Feature: gene Location: 543942-546008 bp Ori: KFX09273.1 Feature: domain Description: SufI Location: 544143-545967 bp Feature: domain Description: SufI Location: 544143-545967 bp Feature: gene Location: 546116-547369 bp Ori: KFX09274.1 Feature: domain Description: proA Location: 546143-547334 bp Feature: domain Description: proA Location: 546143-547334 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT TIGR02646 (TIGR02646 family protein), COG3950 (Predicted ATP-binding protein involved in virulence ), RVT-Retrons, SufI (COG2132), proA (TIGR00407)