myRT

myRT report for GCA_000750615.1_ATN_AFERRI_PRJEB5721

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Seq: CCCS020000023.1 Acidithiobacillus ferrivorans WGS project CCCS000000000 data, strain CF27, contig ATN_AFERRI_Contig_3, whole genome shotgun sequence (459739 bp)
Overview 1 RT 1: 55-2951 bp Neighborhood of RT #1 [55, 3034] RVT-GII GIIM HNHc AcrR Dimerisation2 Methyltransf_2 Feature: gene Location: 55-1059 bp Ori: CDQ09355.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 79-349 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 79-349 bp Feature: domain Description: GIIM Note: maturase Location: 412-640 bp Feature: domain Description: GIIM Note: maturase Location: 41 2-640 bp Feature: domain Description: HNHc Note: nucleases Location: 838-997 bp Feature: domain Description: HNHc Note: nucleases Location: 838-997 bp Feature: gene Location: 1223-1897 bp Ori: CDQ09356.1 Feature: domain Description: AcrR Location: 1307-1784 bp Feature: domain Description: AcrR Location: 1 307-1 784 bp Feature: gene Location: 1913-3034 bp Ori: CDQ09357.1 Feature: domain Description: Dimerisation2 Location: 2024-2261 bp Feature: domain Description: Dimerisation2 Location: 2024-2261 bp Feature: domain Description: Methyltransf_2 Location: 2333-2951 bp Feature: domain Description: Methyltransf_2 Location: 2333-2951 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), HNHc (smart00507), AcrR (COG1309), Dimerisation2, Methyltransf_2 (pfam00891)

Seq: CCCS020000037.1 Acidithiobacillus ferrivorans WGS project CCCS000000000 data, strain CF27, contig ATN_AFERRI_Contig_42, whole genome shotgun sequence (176142 bp)
Overview 1 RT 1: 80502-84681 bp Neighborhood of RT #1 [80502, 84681] HugZ ABC_ATPase ABC_ATPase RVT-Retrons Feature: gene Location: 80502-81227 bp Ori: CDQ10803.1 Feature: domain Description: HugZ Location: 80568-81216 bp Feature: domain Description: HugZ Location: 80568-812 16 bp Feature: gene Location: 81584-82933 bp Ori: CDQ10804.1 Feature: domain Description: ABC_ATPase Location: 81635-81734 bp Feature: domain Description: ABC_ATPase Location: 81635-81734 bp Feature: domain Description: ABC_ATPase Location: 82133-82337 bp Feature: domain Description: ABC_ATPase Location: 82 133-82 337 bp Feature: gene Location: 82920-83936 bp Ori: CDQ10805.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 83097-83655 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 83097-83655 bp Feature: gene Location: 84329-84451 bp Feature: gene Location: 84517-84681 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HugZ (COG0748), ABC_ATPase (pfam09818), RVT-Retrons

Seq: CCCS020000017.1 Acidithiobacillus ferrivorans WGS project CCCS000000000 data, strain CF27, contig ATN_AFERRI_Contig_24, whole genome shotgun sequence (119575 bp)
Overview 1 RT 1: 40420-49969 bp Neighborhood of RT #1 [40420, 49971] DEXHc_Snf DEXHc_Snf RVT_N RVT-GII GIIM HNHc PRK07207 HintN LAGLIDADG_3 PRK07207 Feature: gene Location: 40420-42357 bp Ori: CDQ09222.1 Feature: domain Description: DEXHc_Snf Location: 40609-40849 bp Feature: domain Description: DEXHc_Snf Location: 40609-40849 bp Feature: domain Description: DEXHc_Snf Location: 41509-41701 bp Feature: domain Description: DEXHc_Snf Location: 41509-41701 bp Feature: gene Location: 42455-42700 bp Feature: gene Location: 42952-44643 bp Ori: CDQ09224.1 Feature: domain Description: RVT_N Location: 43000-43243 bp Feature: domain Description: RVT_N Location: 43 000-43 243 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 43288-43924 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 43 288-43 924 bp Feature: domain Description: GIIM Note: maturase Location: 43996-44224 bp Feature: domain Description: GIIM Note: maturase Location: 43 996-44224 bp Feature: domain Description: HNHc Note: nucleases Location: 44431-44596 bp Feature: domain Description: HNHc Note: nucleases Location: 4443 1-44596 bp Feature: gene Location: 44776-45531 bp Feature: gene Location: 45970-49971 bp Ori: CDQ09226.1 Feature: domain Description: PRK07207 Location: 45979-47206 bp Feature: domain Description: PRK07207 Location: 45979-47206 bp Feature: domain Description: HintN Location: 47206-47530 bp Feature: domain Description: HintN Location: 47206-4753 0 bp Feature: domain Description: LAGLIDADG_3 Location: 47935-48145 bp Feature: domain Description: LAGLIDADG_3 Location: 4793 5-48145 bp Feature: domain Description: PRK07207 Location: 48352-49969 bp Feature: domain Description: PRK07207 Location: 483 52-49969 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DEXHc_Snf (cd17919), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507), PRK07207 (ribonucleoside-diphosphate reductase subunit alpha), HintN (smart00306), LAGLIDADG_3 (pfam14528)

Seq: CCCS020000001.1 Acidithiobacillus ferrivorans WGS project CCCS000000000 data, strain CF27, contig ATN_AFERRI_Contig_1, whole genome shotgun sequence (286701 bp)
Overview 1 RT 1: 61301-67384 bp Neighborhood of RT #1 [61301, 67384] Unstab_antitox N6_N4_Mtase RVT-UG5 CN_hydrolase Feature: gene Location: 61301-61516 bp Ori: CDQ12239.1 Feature: domain Description: Unstab_antitox Location: 61319-61478 bp Feature: domain Description: Unstab_antitox Location: 61319-614 78 bp Feature: gene Location: 61520-64498 bp Ori: CDQ12240.1 Feature: domain Description: N6_N4_Mtase Location: 62042-63008 bp Feature: domain Description: N6_N4 _Mtase Location: 6204 2-63008 bp Feature: gene Location: 64500-66470 bp Ori: CDQ12241.1 Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 64974-65472 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 64 974 -654 72 bp Feature: gene Location: 66457-67227 bp Ori: CDQ12242.1 Feature: domain Description: CN_hydrolase Location: 66649-67183 bp Feature: domain Description: CN_hydrolase Location: 6664 9-67183 bp Feature: gene Location: 67145-67384 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Unstab_antitox (pfam09720), N6_N4_Mtase (pfam01555), RVT-UG5, CN_hydrolase (pfam00795)

Seq: CCCS020000024.1 Acidithiobacillus ferrivorans WGS project CCCS000000000 data, strain CF27, contig ATN_AFERRI_Contig_30, whole genome shotgun sequence (2414 bp)
Overview 1 RT 1: 98-2371 bp Neighborhood of RT #1 [98, 2371] RVT-GII GIIM HNHc Feature: gene Location: 98-1909 bp Ori: CDQ09831.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 554-1190 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5 5 4-1190 bp Feature: domain Description: GIIM Note: maturase Location: 1262-1490 bp Feature: domain Description: GIIM Note: maturase Location: 1262-1490 bp Feature: domain Description: HNHc Note: nucleases Location: 1700-1862 bp Feature: domain Description: HNHc Note: nucleases Location: 1700-1862 bp Feature: gene Location: 2138-2371 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), HNHc (smart00507)

Seq: CCCS020000031.1 Acidithiobacillus ferrivorans WGS project CCCS000000000 data, strain CF27, contig ATN_AFERRI_Contig_37, whole genome shotgun sequence (75966 bp)
Overview 1 RT 1: 51788-54617 bp Neighborhood of RT #1 [51788, 54617] SLATT_5 RVT-UG17 Feature: gene Location: 51788-52084 bp Feature: gene Location: 52206-52565 bp Ori: CDQ09963.1 Feature: domain Description: SLATT_5 Location: 52212-52542 bp Feature: domain Description: SLATT_5 Location: 52212-52542 bp Feature: gene Location: 52567-53964 bp Ori: CDQ09964.1 Feature: RT Description: RVT-UG17 Note: UG17 RT Location: 52795-53398 bp Feature: RT Description: RVT-UG17 Note: UG17 RT Location: 52795-53398 bp Feature: gene Location: 54217-54387 bp Feature: gene Location: 54384-54617 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT SLATT_5 (pfam18160), RVT-UG17

Seq: CCCS020000052.1 Acidithiobacillus ferrivorans WGS project CCCS000000000 data, strain CF27, contig ATN_AFERRI_Contig_56, whole genome shotgun sequence (195502 bp)
Overview 1 RT 1: 15784-23741 bp Neighborhood of RT #1 [15784, 23812] GAF_2 sensory_box GAF_2 sensory_box PAS_9 COG5001 RVT-GII RVT-GII GIIM Dam Feature: gene Location: 15784-20289 bp Ori: CDQ11466.1 Feature: domain Description: GAF_2 Location: 16546-16948 bp Feature: domain Description: GAF_2 Location: 16546-16948 bp Feature: domain Description: sensory_box Location: 16999-17344 bp Feature: domain Description: sensory_box Location: 16999-17 344 bp Feature: domain Description: GAF_2 Location: 17446-17860 bp Feature: domain Description: GAF_2 Location: 17 446-17 860 bp Feature: domain Description: sensory_box Location: 17977-18268 bp Feature: domain Description: sensory_box Location: 17 97 7 -18268 bp Feature: domain Description: PAS_9 Location: 18349-18634 bp Feature: domain Description: PAS_9 Location: 18349-18634 bp Feature: domain Description: COG5001 Location: 18637-19921 bp Feature: domain Description: COG5001 Location: 18637 -19921 bp Feature: gene Location: 20395-20619 bp Feature: gene Location: 21068-21760 bp Ori: CDQ11468.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 21188-21635 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 21188-21635 bp Feature: gene Location: 21739-22224 bp Ori: CDQ11469.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 21745-21847 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 217 45-21847 bp Feature: domain Description: GIIM Note: maturase Location: 21916-22126 bp Feature: domain Description: GIIM Note: maturase Location: 21916-22126 bp Feature: gene Location: 22294-22524 bp Feature: gene Location: 22904-23812 bp Ori: CDQ11471.1 Feature: domain Description: Dam Location: 23333-23741 bp Feature: domain Description: Dam Location: 23333-237 41 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT GAF_2 (pfam13185), sensory_box (TIGR00229), PAS_9 (pfam13426), COG5001 (Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain ), RVT-GII, GIIM (pfam08388), Dam (pfam05869)

Seq: CCCS020000049.1 Acidithiobacillus ferrivorans WGS project CCCS000000000 data, strain CF27, contig ATN_AFERRI_Contig_53, whole genome shotgun sequence (309339 bp)
Overview 1 RT 1: 52925-57605 bp 2 RT 2: 189412-194439 bp Neighborhood of RT #1 [52925, 57607] UbiE RVT-GII YtxH PGM1 Neighborhood of RT #2 [189412, 194439] RVT-GII RVT-GII GIIM HNHc Methyltransf_11 Feature: gene Location: 52925-53854 bp Ori: CDQ11163.1 Feature: domain Description: UbiE Location: 53054-53630 bp Feature: domain Description: UbiE Location: 53054-53630 bp Feature: gene Location: 53886-54059 bp Feature: gene Location: 54830-55030 bp Ori: CDQ11165.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 54839-55010 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 548 39-55010 bp Feature: gene Location: 55604-55960 bp Ori: CDQ11166.1 Feature: domain Description: YtxH Location: 55655-55874 bp Feature: domain Description: YtxH Location: 55655-558 74 bp Feature: gene Location: 55976-57607 bp Ori: CDQ11167.1 Gene: pgm Feature: domain Description: PGM1 Location: 55991-57605 bp Feature: domain Description: PGM1 Location: 55991-57605 bp Feature: gene Location: 189412-189639 bp Feature: gene Location: 189777-190208 bp Feature: gene Location: 190073-190666 bp Ori: CDQ11311.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 190091-190394 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 190091-190394 bp Feature: gene Location: 190904-191137 bp Feature: gene Location: 191366-193177 bp Ori: CDQ11313.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 191822-192458 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1918 22-192458 bp Feature: domain Description: GIIM Note: maturase Location: 192530-192758 bp Feature: domain Description: GIIM Note: maturase Location: 192530-192758 bp Feature: domain Description: HNHc Note: nucleases Location: 192968-193130 bp Feature: domain Description: HNHc Note: nucleases Location: 192968 -193130 bp Feature: gene Location: 193354-194061 bp Ori: CDQ11314.1 Feature: domain Description: Methyltransf_11 Location: 193507-193765 bp Feature: domain Description: Methyltransf_11 Location: 193507-193765 bp Feature: gene Location: 194122-194439 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT UbiE (COG2226), RVT-GII, YtxH (pfam12732), PGM1 (cd03085), GIIM (pfam08388), HNHc (smart00507), Methyltransf_11 (pfam08241)