myRT

myRT report for GCA_000751715.1_HGAP_corrected

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Seq: CCVU01000001.1 Pseudomonas aeruginosa genome assembly HGAP_corrected, contig unitig_0, whole genome shotgun sequence (5967688 bp)
Overview 1 RT 1: 1634199-1640157 bp 2 RT 2: 1690439-1696171 bp 3 RT 3: 3617615-3626326 bp 4 RT 4: 4182661-4188431 bp 5 RT 5: 4279830-4285563 bp 6 RT 6: 4565334-4576867 bp 7 RT 7: 5891750-5896129 bp 8 RT 8: 5960316-5967237 bp Neighborhood of RT #1 [1634199, 1640157] conj_PilL SF2_C_SNF RVT_N RVT-GII GIIM HNHc DEXHc_Snf Neighborhood of RT #2 [1690439, 1696171] HDOD YgfZ RVT-GII YkfC HNHc SdhE Neighborhood of RT #3 [3617615, 3626346] SLC-NCS1sbd_CobB-like RVT-GII GIIM Hydantoinase_B HyuA Neighborhood of RT #4 [4182661, 4188538] DEXHc_Snf RVT_N RVT-GII GIIM HNHc SF2_C_SNF conj_PilL Neighborhood of RT #5 [4279830, 4285563] DEXHc_Snf RVT_N RVT-GII GIIM HNHc SF2_C_SNF Neighborhood of RT #6 [4565334, 4576947] HsdM restrict_AAA_1 restrict_AAA_1 RVT-GII YkfC HNHc RMtype1_S_Eco933I-TRD2-CR2_like RMtype1_S_Eco933I-TRD2-CR2_like HsdR Neighborhood of RT #7 [5891750, 5896129] ABC_phnC DUF772 RVT-GII GIIM Neighborhood of RT #8 [5960316, 5967320] CHD CHD RVT-GII GIIM DUF772 ABC_phnC Feature: gene Location: 1634199-1634777 bp Feature: domain Description: conj_PilL Location: 1634361-1634670 bp Feature: domain Description: conj_PilL Location: 1 634361 -1 634670 bp Feature: gene Location: 1635011-1636171 bp Feature: domain Description: SF2_C_SNF Location: 1635611-1636007 bp Feature: domain Description: SF2_C_SNF Location: 1 63561 1 -1 636007 bp Feature: gene Location: 1636338-1638056 bp Feature: RT Description: RVT_N Location: 1636395-1636632 bp Feature: RT Description: RVT_N Location: 1 636395-1 636632 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1636683-1637334 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 636683-1 637334 bp Feature: domain Description: GIIM Note: maturase Location: 1637388-1637619 bp Feature: domain Description: GIIM Note: maturase Location: 1 637388-1 63761 9 bp Feature: domain Description: HNHc Note: nucleases Location: 1637853-1638009 bp Feature: domain Description: HNHc Note: nucleases Location: 1 637853-1 638009 bp Feature: gene Location: 1638653-1639708 bp Feature: domain Description: DEXHc_Snf Location: 1638872-1639133 bp Feature: domain Description: DEXHc_Snf Location: 1 638872-1 6391 33 bp Feature: gene Location: 1639846-1640157 bp Feature: gene Location: 1690439-1691275 bp Feature: domain Description: HDOD Location: 1690442-1691270 bp Feature: domain Description: HDOD Location: 1 690442-1 691 270 bp Feature: gene Location: 1691376-1692320 bp Feature: domain Description: YgfZ Location: 1691385-1692285 bp Feature: domain Description: YgfZ Location: 1 691 385-1 692285 bp Feature: gene Location: 1694190-1695494 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1694193-1694769 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 6941 93-1 694769 bp Feature: domain Description: YkfC Location: 1694967-1695072 bp Feature: domain Description: YkfC Location: 1 694967-1 695072 bp Feature: domain Description: HNHc Note: nucleases Location: 1695273-1695438 bp Feature: domain Description: HNHc Note: nucleases Location: 1 695273-1 695438 bp Feature: gene Location: 1695584-1695838 bp Feature: domain Description: SdhE Location: 1695590-1695830 bp Feature: domain Description: SdhE Location: 1 695590-1 695830 bp Feature: gene Location: 1695977-1696171 bp Feature: gene Location: 3617615-3618976 bp Feature: domain Description: SLC-NCS1sbd_CobB-like Location: 3617672-3618932 bp Feature: domain Description: SLC-NCS1 sbd_CobB-like Location: 361 7672-361 8932 bp Feature: gene Location: 3619465-3620301 bp Feature: gene Location: 3620897-3622174 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3621158-3621773 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3621 1 58-3621 773 bp Feature: domain Description: GIIM Note: maturase Location: 3621827-3622055 bp Feature: domain Description: GIIM Note: maturase Location: 3621 827-3622055 bp Feature: gene Location: 3622475-3624220 bp Feature: domain Description: Hydantoinase_B Location: 3622490-3624074 bp Feature: domain Description: Hydantoinase_B Location: 3622490-3624074 bp Feature: gene Location: 3624256-3626346 bp Feature: domain Description: HyuA Location: 3624271-3626326 bp Feature: domain Description: HyuA Location: 3624271 -3626326 bp Feature: gene Location: 4182661-4182966 bp Feature: gene Location: 4183103-4184158 bp Feature: domain Description: DEXHc_Snf Location: 4183322-4183580 bp Feature: domain Description: DEXHc_Snf Location: 41 83322-41 83580 bp Feature: gene Location: 4184755-4186473 bp Feature: RT Description: RVT_N Location: 4184812-4185049 bp Feature: RT Description: RVT_N Location: 41 8481 2-41 85049 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4185100-4185751 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 41 851 00-41 85751 bp Feature: domain Description: GIIM Note: maturase Location: 4185805-4186036 bp Feature: domain Description: GIIM Note: maturase Location: 41 85805-41 86036 bp Feature: domain Description: HNHc Note: nucleases Location: 4186270-4186426 bp Feature: domain Description: HNHc Note: nucleases Location: 41 86270-41 86426 bp Feature: gene Location: 4186640-4187800 bp Feature: domain Description: SF2_C_SNF Location: 4187240-4187636 bp Feature: domain Description: SF2_C_SNF Location: 41 87240-41 87636 bp Feature: gene Location: 4187939-4188538 bp Feature: domain Description: conj_PilL Location: 4188122-4188431 bp Feature: domain Description: conj_PilL Location: 41 881 22-41 88431 bp Feature: gene Location: 4279830-4280135 bp Feature: gene Location: 4280271-4281326 bp Feature: domain Description: DEXHc_Snf Location: 4280490-4280751 bp Feature: domain Description: DEXHc_Snf Location: 4280490-4280751 bp Feature: gene Location: 4281923-4283641 bp Feature: RT Description: RVT_N Location: 4281980-4282217 bp Feature: RT Description: RVT_N Location: 4281 980-428221 7 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4282268-4282919 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4282268-428291 9 bp Feature: domain Description: GIIM Note: maturase Location: 4282973-4283204 bp Feature: domain Description: GIIM Note: maturase Location: 4282973-4283204 bp Feature: domain Description: HNHc Note: nucleases Location: 4283438-4283594 bp Feature: domain Description: HNHc Note: nucleases Location: 4283438-4283594 bp Feature: gene Location: 4283808-4284968 bp Feature: domain Description: SF2_C_SNF Location: 4284426-4284804 bp Feature: domain Description: SF2_C_SNF Location: 4284426-4284804 bp Feature: gene Location: 4285027-4285563 bp Feature: gene Location: 4565334-4566854 bp Feature: domain Description: HsdM Location: 4565343-4566618 bp Feature: domain Description: HsdM Location: 4565343-456661 8 bp Feature: gene Location: 4567665-4569275 bp Feature: domain Description: restrict_AAA_1 Location: 4567947-4568208 bp Feature: domain Description: restrict_AAA_1 Location: 4567947-4568208 bp Feature: domain Description: restrict_AAA_1 Location: 4568541-4569003 bp Feature: domain Description: restrict_AAA_1 Location: 4568541 -4569003 bp Feature: gene Location: 4570857-4572161 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4570860-4571436 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4570860-4571 436 bp Feature: domain Description: YkfC Location: 4571634-4571739 bp Feature: domain Description: YkfC Location: 4571 634-4571 739 bp Feature: domain Description: HNHc Note: nucleases Location: 4571940-4572105 bp Feature: domain Description: HNHc Note: nucleases Location: 4571 940-45721 05 bp Feature: gene Location: 4572389-4574170 bp Feature: domain Description: RMtype1_S_Eco933I-TRD2-CR2_like Location: 4572410-4572989 bp Feature: domain Description: RMtype1 _S_Eco933I-TRD2-CR2_like Location: 457241 0-4572989 bp Feature: domain Description: RMtype1_S_Eco933I-TRD2-CR2_like Location: 4573220-4573799 bp Feature: domain Description: RMtype1 _S_Eco933I-TRD2-CR2_like Location: 4573220-4573799 bp Feature: gene Location: 4574167-4576947 bp Feature: domain Description: HsdR Location: 4574173-4576867 bp Feature: domain Description: HsdR Location: 45741 73-4576867 bp Feature: gene Location: 5891750-5892577 bp Feature: domain Description: ABC_phnC Location: 5891780-5892494 bp Feature: domain Description: ABC_phnC Location: 5891 780-5892494 bp Feature: gene Location: 5892920-5893561 bp Feature: domain Description: DUF772 Location: 5893070-5893265 bp Feature: domain Description: DUF772 Location: 5893070-5893265 bp Feature: gene Location: 5893950-5895218 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5894163-5894820 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 58941 63-5894820 bp Feature: domain Description: GIIM Note: maturase Location: 5894898-5895120 bp Feature: domain Description: GIIM Note: maturase Location: 5894898-58951 20 bp Feature: gene Location: 5895368-5895766 bp Feature: gene Location: 5895950-5896129 bp Feature: gene Location: 5960316-5961860 bp Feature: domain Description: CHD Location: 5960532-5960946 bp Feature: domain Description: CHD Location: 5960532-5960946 bp Feature: domain Description: CHD Location: 5961174-5961663 bp Feature: domain Description: CHD Location: 5961 1 74-5961 663 bp Feature: gene Location: 5962944-5963123 bp Feature: gene Location: 5963854-5965122 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5964067-5964724 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5964067-5964724 bp Feature: domain Description: GIIM Note: maturase Location: 5964802-5965024 bp Feature: domain Description: GIIM Note: maturase Location: 5964802-5965024 bp Feature: gene Location: 5965615-5966151 bp Feature: domain Description: DUF772 Location: 5965765-5965930 bp Feature: domain Description: DUF772 Location: 5965765-5965930 bp Feature: gene Location: 5966493-5967320 bp Feature: domain Description: ABC_phnC Location: 5966523-5967237 bp Feature: domain Description: ABC_phnC Location: 5966523-5967237 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT conj_PilL (TIGR03748), SF2_C_SNF (cd18793), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507), DEXHc_Snf (cd17919), HDOD (pfam08668), YgfZ (COG0354), YkfC (COG3344)
SdhE (COG2938), SLC-NCS1sbd_CobB-like (cd11484), Hydantoinase_B (pfam02538), HyuA (COG0145), HsdM (COG0286), restrict_AAA_1 (TIGR04435), RMtype1_S_Eco933I-TRD2-CR2_like (cd17253), HsdR (COG4096), ABC_phnC (TIGR02315), DUF772 (pfam05598)
CHD (cd07302)

Seq: CCVU01000002.1 Pseudomonas aeruginosa genome assembly HGAP_corrected, contig unitig_1, whole genome shotgun sequence (985515 bp)
Overview 1 RT 1: 691375-701681 bp 2 RT 2: 717939-726776 bp Neighborhood of RT #1 [691375, 701683] COG3177 RVT_N RVT-GII GIIM HNH PBP2_BvgS_HisK_like PRK09776 PAS PRK10060 PRK05658 Neighborhood of RT #2 [717939, 726805] PRK10770 LptD RVT_N RVT-GII YkfC HNH COG3178 NTP_transferase_like_1 Feature: gene Location: 691375-692496 bp Feature: domain Description: COG3177 Location: 691393-692485 bp Feature: domain Description: COG3177 Location: 691393-692 485 bp Feature: gene Location: 692755-692892 bp Feature: gene Location: 693220-694905 bp Feature: RT Description: RVT_N Location: 693277-693517 bp Feature: RT Description: RVT_N Location: 6932 77-693517 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 693565-694201 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 693565-6942 01 bp Feature: domain Description: GIIM Note: maturase Location: 694255-694486 bp Feature: domain Description: GIIM Note: maturase Location: 6942 55-694486 bp Feature: domain Description: HNH Note: nucleases Location: 694738-694876 bp Feature: domain Description: HNH Note: nucleases Location: 694738-694876 bp Feature: gene Location: 695986-699723 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 696094-696751 bp Feature: domain Description: PBP2 _BvgS_HisK_like Location: 696094-696751 bp Feature: domain Description: PRK09776 Location: 696964-697435 bp Feature: domain Description: PRK09776 Location: 696964-697435 bp Feature: domain Description: PAS Location: 697480-698017 bp Feature: domain Description: PAS Location: 697480-698017 bp Feature: domain Description: PRK10060 Location: 698026-699673 bp Feature: domain Description: PRK10060 Location: 69802 6-699673 bp Feature: gene Location: 699830-701683 bp Feature: domain Description: PRK05658 Location: 699842-701681 bp Feature: domain Description: PRK05658 Location: 699842 -701681 bp Feature: gene Location: 717939-719153 bp Feature: domain Description: PRK10770 Location: 717951-719145 bp Feature: domain Description: PRK10770 Location: 717951-719145 bp Feature: gene Location: 719212-722001 bp Feature: domain Description: LptD Location: 719407-721987 bp Feature: domain Description: LptD Location: 719407-72 1987 bp Feature: gene Location: 722134-723846 bp Feature: RT Description: RVT_N Location: 722191-722434 bp Feature: RT Description: RVT_N Location: 72 2 191-72 2 434 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 722479-723115 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 72 2 479-72 3115 bp Feature: domain Description: YkfC Location: 723325-723475 bp Feature: domain Description: YkfC Location: 72 332 5-72 3475 bp Feature: domain Description: HNH Note: nucleases Location: 723652-723790 bp Feature: domain Description: HNH Note: nucleases Location: 72 3652 -72 3790 bp Feature: gene Location: 725118-726134 bp Feature: domain Description: COG3178 Location: 725121-726120 bp Feature: domain Description: COG3178 Location: 72 512 1-72 612 0 bp Feature: gene Location: 726131-726805 bp Feature: domain Description: NTP_transferase_like_1 Location: 726137-726776 bp Feature: domain Description: NTP_transferase_like_1 Location: 72 6137-72 6776 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3177 (Fic family protein ), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNH (pfam01844), PBP2_BvgS_HisK_like (cd01007), PRK09776 (putative diguanylate cyclase; Provisional), PAS (smart00091), PRK10060 (cyclic di-GMP phosphodiesterase), PRK05658 (RNA polymerase sigma factor RpoD; Validated)
PRK10770 (peptidyl-prolyl cis-trans isomerase SurA; Provisional), LptD (COG1452), YkfC (COG3344), COG3178 (Predicted phosphotransferase, aminoglycoside/choline kinase (APH/ChoK) family ), NTP_transferase_like_1 (cd06422)

Seq: CCVU01000003.1 Pseudomonas aeruginosa genome assembly HGAP_corrected, contig unitig_2, whole genome shotgun sequence (257350 bp)
Overview 1 RT 1: 106092-111805 bp Neighborhood of RT #1 [106092, 111834] Nnt1 YbaY RVT_N RVT-GII GIIM HNHc TIGR00244 ribD Feature: gene Location: 106092-106754 bp Feature: domain Description: Nnt1 Location: 106095-106563 bp Feature: domain Description: Nnt1 Location: 106095-106563 bp Feature: gene Location: 106751-107221 bp Feature: domain Description: YbaY Location: 106754-107216 bp Feature: domain Description: YbaY Location: 106754-107216 bp Feature: gene Location: 108449-110155 bp Feature: RT Description: RVT_N Location: 108506-108743 bp Feature: RT Description: RVT_N Location: 108506-108743 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 108794-109430 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 108794-10943 0 bp Feature: domain Description: GIIM Note: maturase Location: 109481-109715 bp Feature: domain Description: GIIM Note: maturase Location: 109481-109715 bp Feature: domain Description: HNHc Note: nucleases Location: 109934-110099 bp Feature: domain Description: HNHc Note: nucleases Location: 10993 4-110099 bp Feature: gene Location: 110252-110716 bp Feature: domain Description: TIGR00244 Location: 110255-110693 bp Feature: domain Description: TIGR00244 Location: 110255-110693 bp Feature: gene Location: 110713-111834 bp Feature: domain Description: ribD Location: 110728-111805 bp Feature: domain Description: ribD Location: 110728-111805 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Nnt1 (COG3897), YbaY (COG3126), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507), TIGR00244 (transcriptional regulator NrdR), ribD (PRK10786)