myRT

myRT report for GCA_000752555.1_FHI76

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Seq: CCQT01000152.1 (40522 bp)
Overview 1 RT 1: 11330-16055 bp Neighborhood of RT #1 [11330, 16078] PHA02517 YkfC RVT-GII GIIM PHA02517 LZ_Tnp_IS66 zf-IS66 DDE_Tnp_IS66 DDE_Tnp_IS66_C Feature: gene Location: 11330-11593 bp Feature: domain Description: PHA02517 Location: 11336-11528 bp Feature: domain Description: PHA0251 7 Location: 1 1 336-1 1 528 bp Feature: gene Location: 11898-12323 bp Feature: gene Location: 12277-13953 bp Feature: domain Description: YkfC Location: 12286-12502 bp Feature: domain Description: YkfC Location: 1 2286-1 2502 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 12703-13435 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 2703-1 3435 bp Feature: domain Description: GIIM Note: maturase Location: 13510-13708 bp Feature: domain Description: GIIM Note: maturase Location: 1 351 0-1 3708 bp Feature: gene Location: 14148-14522 bp Feature: domain Description: PHA02517 Location: 14151-14511 bp Feature: domain Description: PHA0251 7 Location: 1 41 51 -1 451 1 bp Feature: gene Location: 14540-16078 bp Feature: domain Description: LZ_Tnp_IS66 Location: 14657-14870 bp Feature: domain Description: LZ_Tnp_IS66 Location: 1 4657-1 4870 bp Feature: domain Description: zf-IS66 Location: 14894-15023 bp Feature: domain Description: zf-IS66 Location: 1 4894-1 5023 bp Feature: domain Description: DDE_Tnp_IS66 Location: 15068-15923 bp Feature: domain Description: DDE_Tnp_IS66 Location: 1 5068-1 5923 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 15944-16055 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 1 5944-1 6055 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PHA02517 (putative transposase OrfB; Reviewed), YkfC (COG3344), RVT-GII, GIIM (pfam08388), LZ_Tnp_IS66 (pfam13007), zf-IS66 (pfam13005), DDE_Tnp_IS66 (pfam03050), DDE_Tnp_IS66_C (pfam13817)

Seq: CCQT01000156.1 (23181 bp)
Overview 1 RT 1: 18967-22689 bp Neighborhood of RT #1 [18967, 22689] DUF1380 ArdA ArdA RVT_N RVT-GII GIIM HNHc Feature: gene Location: 18967-19389 bp Feature: domain Description: DUF1380 Location: 18970-19267 bp Feature: domain Description: DUF1380 Location: 18970-192 67 bp Feature: gene Location: 19877-20581 bp Feature: domain Description: ArdA Location: 19916-20096 bp Feature: domain Description: ArdA Location: 19916-2 0096 bp Feature: domain Description: ArdA Location: 20135-20570 bp Feature: domain Description: ArdA Location: 2 0135-2 0570 bp Feature: gene Location: 20839-22506 bp Feature: RT Description: RVT_N Location: 20887-21124 bp Feature: RT Description: RVT_N Location: 2 0887-2 112 4 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 21175-21817 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 1175-2 1817 bp Feature: domain Description: GIIM Note: maturase Location: 21868-22102 bp Feature: domain Description: GIIM Note: maturase Location: 2 1868-2 2 102 bp Feature: domain Description: HNHc Note: nucleases Location: 22312-22471 bp Feature: domain Description: HNHc Note: nucleases Location: 2 2 312 -2 2 471 bp Feature: gene Location: 22543-22689 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF1380 (pfam07128), ArdA (pfam07275), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507)