myRT

myRT report for GCA_000752855.1_FHI19

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Seq: CCPR01000020.1 (2272 bp)
Overview 1 RT 1: 93-2269 bp Neighborhood of RT #1 [93, 2269] RVT-GII GIIM Feature: gene Location: 93-1616 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 366-1098 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 366-1 098 bp Feature: domain Description: GIIM Note: maturase Location: 1173-1371 bp Feature: domain Description: GIIM Note: maturase Location: 1 1 73-1 371 bp Feature: gene Location: 1910-2269 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: CCPR01000226.1 (37861 bp)
Overview 1 RT 1: 3-2221 bp Neighborhood of RT #1 [3, 2232] RVT-GII GIIM PRK01271 RutF Feature: gene Location: 3-1154 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 108-765 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 108-765 bp Feature: domain Description: GIIM Note: maturase Location: 849-1059 bp Feature: domain Description: GIIM Note: maturase Location: 849-1059 bp Feature: gene Location: 1432-1659 bp Feature: domain Description: PRK01271 Location: 1435-1657 bp Feature: domain Description: PRK012 71 Location: 1435-1657 bp Feature: gene Location: 1663-2232 bp Feature: domain Description: RutF Location: 1717-2221 bp Feature: domain Description: RutF Location: 1717-2 2 2 1 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK01271 (tautomerase PptA), RutF (TIGR03615), RVT-GII, GIIM (pfam08388)

Seq: CCPR01000044.1 (2417 bp)
Overview 1 RT 1: 522-2274 bp Neighborhood of RT #1 [522, 2300] RVT-GII Intron_maturas2 HNHc Feature: gene Location: 522-2300 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 783-1578 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 783 -1578 bp Feature: domain Description: Intron_maturas2 Location: 1704-1929 bp Feature: domain Description: Intron_maturas2 Location: 1704-1929 bp Feature: domain Description: HNHc Note: nucleases Location: 2124-2274 bp Feature: domain Description: HNHc Note: nucleases Location: 2124-2274 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507)

Seq: CCPR01000131.1 (7843 bp)
Overview 1 RT 1: 3-3472 bp Neighborhood of RT #1 [3, 3477] COG3436 RVT-GII GIIM PinE Feature: gene Location: 3-233 bp Feature: gene Location: 745-927 bp Feature: gene Location: 87-2120 bp Feature: domain Description: COG3436 Location: 213-693 bp Feature: domain Description: COG34 36 Location: 213-693 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1089-1707 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1089-1707 bp Feature: domain Description: GIIM Note: maturase Location: 1755-1986 bp Feature: domain Description: GIIM Note: maturase Location: 1755-1986 bp Feature: gene Location: 2329-2730 bp Feature: gene Location: 2830-3477 bp Feature: domain Description: PinE Location: 2923-3472 bp Feature: domain Description: PinE Location: 2923-34 72 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PinE (COG1961), COG3436 (Transposase ), RVT-GII, GIIM (pfam08388)