myRT

myRT report for GCA_000754685.1_ASM75468v1

Download annotations/find similar RTs

Seq: JQOH01000003.1 Pectobacterium wasabiae strain NCPPB3702 contig_3, whole genome shotgun sequence (622928 bp)
Overview 1 RT 1: 539552-547469 bp Neighborhood of RT #1 [539552, 547504] TIGR02646 COG3950 RVT-Retrons SufI proA Feature: gene Location: 539552-540334 bp Ori: KGA29377.1 Feature: domain Description: TIGR02646 Location: 539630-540158 bp Feature: domain Description: TIGR02646 Location: 539630-5401 58 bp Feature: gene Location: 540315-541940 bp Ori: KGA29378.1 Feature: domain Description: COG3950 Location: 540498-541824 bp Feature: domain Description: COG3950 Location: 540498-541 824 bp Feature: gene Location: 541918-542880 bp Ori: KGA29379.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 542017-542614 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 54201 7-54261 4 bp Feature: gene Location: 544077-546143 bp Ori: KGA29380.1 Feature: domain Description: SufI Location: 544278-546102 bp Feature: domain Description: SufI Location: 544278-5461 02 bp Feature: gene Location: 546251-547504 bp Ori: KGA29381.1 Feature: domain Description: proA Location: 546278-547469 bp Feature: domain Description: proA Location: 546278-547469 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT TIGR02646 (TIGR02646 family protein), COG3950 (Predicted ATP-binding protein involved in virulence ), RVT-Retrons, SufI (COG2132), proA (TIGR00407)

Seq: JQOH01000001.1 Pectobacterium wasabiae strain NCPPB3702 contig_1, whole genome shotgun sequence (789633 bp)
Overview 1 RT 1: 393069-397546 bp Neighborhood of RT #1 [393069, 397546] PRK13889 RVT-Retrons HTH_XRE Feature: gene Location: 393069-393656 bp Feature: gene Location: 394287-395789 bp Ori: KGA30681.1 Feature: domain Description: PRK13889 Location: 394290-394869 bp Feature: domain Description: PRK13889 Location: 3942 90-394869 bp Feature: gene Location: 395866-396966 bp Ori: KGA30682.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 396007-396559 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 396007-396559 bp Feature: gene Location: 396959-397240 bp Ori: KGA30683.1 Feature: domain Description: HTH_XRE Location: 396974-397139 bp Feature: domain Description: HTH_XRE Location: 396974-397139 bp Feature: gene Location: 397331-397546 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK13889 (conjugal transfer relaxase TraA; Provisional), RVT-Retrons, HTH_XRE (smart00530)