myRT

myRT report for GCA_000756305.1_ASM75630v1

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Seq: JRFE01000001.1 Myxosarcina sp. GI1 contig_0, whole genome shotgun sequence (195043 bp)
Overview 1 RT 1: 1-6893 bp Neighborhood of RT #1 [1, 7039] DDE_Tnp_1 RVT-GII GIIM HNHc RVT-GII GIIM HNHc RVT_N RVT-GII DDE_Tnp_1_3 DEDD_Tnp_IS110 COG3547 Feature: gene Location: 1-297 bp Feature: domain Description: DDE_Tnp_1 Location: 70-250 bp Feature: domain Description: DDE_Tnp_1 Location: 70-250 bp Feature: gene Location: 383-1636 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 491-821 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 491 -821 bp Feature: domain Description: GIIM Note: maturase Location: 923-1148 bp Feature: domain Description: GIIM Note: maturase Location: 923-1 1 48 bp Feature: domain Description: HNHc Note: nucleases Location: 1364-1514 bp Feature: domain Description: HNHc Note: nucleases Location: 1 364-1 51 4 bp Feature: gene Location: 1639-3300 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1921-2605 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 921 -2605 bp Feature: domain Description: GIIM Note: maturase Location: 2671-2896 bp Feature: domain Description: GIIM Note: maturase Location: 2671 -2896 bp Feature: domain Description: HNHc Note: nucleases Location: 3121-3274 bp Feature: domain Description: HNHc Note: nucleases Location: 31 21 -3274 bp Feature: gene Location: 3430-3720 bp Feature: gene Location: 3887-4621 bp Feature: RT Description: RVT_N Location: 3932-4178 bp Feature: RT Description: RVT_N Location: 3932-41 78 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4220-4595 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4220-4595 bp Feature: gene Location: 5161-5628 bp Feature: domain Description: DDE_Tnp_1_3 Location: 5179-5512 bp Feature: domain Description: DDE_Tnp_1 _3 Location: 51 79-551 2 bp Feature: gene Location: 5654-7039 bp Feature: domain Description: DEDD_Tnp_IS110 Location: 5741-6173 bp Feature: domain Description: DEDD_Tnp_IS1 1 0 Location: 5741 -61 73 bp Feature: domain Description: COG3547 Location: 6281-6893 bp Feature: domain Description: COG3547 Location: 6281 -6893 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DDE_Tnp_1 (pfam01609), RVT-GII, GIIM (pfam08388), HNHc (smart00507), RVT_N (pfam13655), DDE_Tnp_1_3 (pfam13612), DEDD_Tnp_IS110 (pfam01548), COG3547 (Transposase )

Seq: JRFE01000008.1 Myxosarcina sp. GI1 contig_7, whole genome shotgun sequence (64400 bp)
Overview 1 RT 1: 59165-64399 bp Neighborhood of RT #1 [59165, 64399] RVT-GII GIIM HNHc RVT-GII GIIM HNHc RVT_N RVT-GII Feature: gene Location: 59165-59371 bp Feature: gene Location: 59430-59651 bp Feature: gene Location: 59663-60655 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 59669-59834 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 59669-59834 bp Feature: domain Description: GIIM Note: maturase Location: 59936-60170 bp Feature: domain Description: GIIM Note: maturase Location: 59936-60170 bp Feature: domain Description: HNHc Note: nucleases Location: 60362-60524 bp Feature: domain Description: HNHc Note: nucleases Location: 60362 -6052 4 bp Feature: gene Location: 60757-60921 bp Feature: gene Location: 60924-62585 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 61206-61890 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 612 06-61890 bp Feature: domain Description: GIIM Note: maturase Location: 61956-62181 bp Feature: domain Description: GIIM Note: maturase Location: 61956-62 181 bp Feature: domain Description: HNHc Note: nucleases Location: 62406-62559 bp Feature: domain Description: HNHc Note: nucleases Location: 62 406-62 559 bp Feature: gene Location: 62715-63005 bp Feature: gene Location: 63172-63939 bp Feature: RT Description: RVT_N Location: 63250-63496 bp Feature: RT Description: RVT_N Location: 632 50-63496 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 63538-63913 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 63538-63913 bp Feature: gene Location: 64265-64399 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), HNHc (smart00507), RVT_N (pfam13655)

Seq: JRFE01000010.1 Myxosarcina sp. GI1 contig_9, whole genome shotgun sequence (180728 bp)
Overview 1 RT 1: 75560-83031 bp Neighborhood of RT #1 [75560, 83031] AmyAc_Amylosucrase Malt_amylase_C DDE_Tnp_1_3 RVT_N RVT-GII RVT-GII GIIM HNHc RVT-GII GIIM HNHc Feature: gene Location: 75560-77515 bp Feature: domain Description: AmyAc_Amylosucrase Location: 75680-77273 bp Feature: domain Description: AmyAc_Amylosucrase Location: 75680-77273 bp Feature: domain Description: Malt_amylase_C Location: 77291-77507 bp Feature: domain Description: Malt_amylase_C Location: 77291-77507 bp Feature: gene Location: 77727-77966 bp Feature: domain Description: DDE_Tnp_1_3 Location: 77730-77886 bp Feature: domain Description: DDE_Tnp_1_3 Location: 7773 0-77886 bp Feature: gene Location: 78520-79254 bp Feature: RT Description: RVT_N Location: 78565-78811 bp Feature: RT Description: RVT_N Location: 78565-78811 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 78853-79228 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 78853 -79228 bp Feature: gene Location: 79421-79711 bp Feature: gene Location: 79841-81502 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 80123-80807 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 80123 -80807 bp Feature: domain Description: GIIM Note: maturase Location: 80873-81098 bp Feature: domain Description: GIIM Note: maturase Location: 80873 -81098 bp Feature: domain Description: HNHc Note: nucleases Location: 81323-81476 bp Feature: domain Description: HNHc Note: nucleases Location: 813 23 -81476 bp Feature: gene Location: 81505-82392 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 81613-81940 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 81613 -81940 bp Feature: domain Description: GIIM Note: maturase Location: 82048-82276 bp Feature: domain Description: GIIM Note: maturase Location: 82048-82276 bp Feature: gene Location: 82442-82765 bp Feature: domain Description: HNHc Note: nucleases Location: 82472-82634 bp Feature: domain Description: HNHc Note: nucleases Location: 82472-8263 4 bp Feature: gene Location: 82777-83031 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT AmyAc_Amylosucrase (cd11324), Malt_amylase_C (pfam16657), DDE_Tnp_1_3 (pfam13612), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507)

Seq: JRFE01000023.1 Myxosarcina sp. GI1 contig_22, whole genome shotgun sequence (150202 bp)
Overview 1 RT 1: 46254-58011 bp Neighborhood of RT #1 [46254, 58011] Sulfotransfer_1 PRK07590 RVT_N RVT-GII GIIM HNH PRK07590 RVT-GII GIIM HNHc RVT-GII GIIM HNHc RVT-GII Feature: gene Location: 46254-47147 bp Feature: domain Description: Sulfotransfer_1 Location: 46647-47091 bp Feature: domain Description: Sulfotransfer_1 Location: 4 664 7-4 7091 bp Feature: gene Location: 47506-47751 bp Feature: domain Description: PRK07590 Location: 47509-47743 bp Feature: domain Description: PRK07590 Location: 4 7509-4 774 3 bp Feature: gene Location: 48625-50442 bp Feature: RT Description: RVT_N Location: 48670-48913 bp Feature: RT Description: RVT_N Location: 4 8670-4 8913 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 48958-49627 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4 8958-4 9627 bp Feature: domain Description: GIIM Note: maturase Location: 49729-49960 bp Feature: domain Description: GIIM Note: maturase Location: 4 9729-4 9960 bp Feature: domain Description: HNH Note: nucleases Location: 50182-50317 bp Feature: domain Description: HNH Note: nucleases Location: 50182-50317 bp Feature: gene Location: 50559-51554 bp Feature: domain Description: PRK07590 Location: 50562-51543 bp Feature: domain Description: PRK07590 Location: 50562-5154 3 bp Feature: gene Location: 51700-52761 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 51730-52030 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 51730-52030 bp Feature: domain Description: GIIM Note: maturase Location: 52129-52363 bp Feature: domain Description: GIIM Note: maturase Location: 52129-52363 bp Feature: domain Description: HNHc Note: nucleases Location: 52561-52708 bp Feature: domain Description: HNHc Note: nucleases Location: 52561-52708 bp Feature: gene Location: 52841-54502 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 53123-53807 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 53123-53807 bp Feature: domain Description: GIIM Note: maturase Location: 53873-54098 bp Feature: domain Description: GIIM Note: maturase Location: 53873-54 098 bp Feature: domain Description: HNHc Note: nucleases Location: 54323-54476 bp Feature: domain Description: HNHc Note: nucleases Location: 54 323-54 4 76 bp Feature: gene Location: 54632-54922 bp Feature: gene Location: 55089-55547 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 55146-55524 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5514 6-55524 bp Feature: gene Location: 55761-55985 bp Feature: gene Location: 56641-58011 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Sulfotransfer_1 (pfam00685), PRK07590 (L,L-diaminopimelate aminotransferase; Validated), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNH (pfam01844), HNHc (smart00507)

Seq: JRFE01000024.1 Myxosarcina sp. GI1 contig_23, whole genome shotgun sequence (479896 bp)
Overview 1 RT 1: 88096-93972 bp Neighborhood of RT #1 [88096, 93972] obgE GT4_MtfB-like RVT_N RVT-GII GIIM HNHc Feature: gene Location: 88096-89106 bp Feature: domain Description: obgE Location: 88102-89092 bp Feature: domain Description: obgE Location: 88102-89092 bp Feature: gene Location: 89202-90287 bp Feature: domain Description: GT4_MtfB-like Location: 89217-90261 bp Feature: domain Description: GT4_MtfB-like Location: 89217-90261 bp Feature: gene Location: 90920-92626 bp Feature: RT Description: RVT_N Location: 90977-91220 bp Feature: RT Description: RVT_N Location: 90977-91220 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 91268-91928 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 91268-91928 bp Feature: domain Description: GIIM Note: maturase Location: 91982-92213 bp Feature: domain Description: GIIM Note: maturase Location: 91982-92213 bp Feature: domain Description: HNHc Note: nucleases Location: 92390-92597 bp Feature: domain Description: HNHc Note: nucleases Location: 92390-925 97 bp Feature: gene Location: 93575-93721 bp Feature: gene Location: 93823-93972 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT obgE (PRK12299), GT4_MtfB-like (cd03809), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507)

Seq: JRFE01000032.1 Myxosarcina sp. GI1 contig_31, whole genome shotgun sequence (161491 bp)
Overview 1 RT 1: 40077-48196 bp 2 RT 2: 53351-62222 bp Neighborhood of RT #1 [40077, 48196] COG3378 RVT_N RVT-GII GIIM HNHc HTH_XRE Neighborhood of RT #2 [53351, 62233] INT_FimBE_like DUF4158 DDE_Tnp_Tn3 RVT_N RVT-GII GIIM McrA PAS FhlA BaeS Feature: gene Location: 40077-41288 bp Feature: gene Location: 41373-44258 bp Feature: domain Description: COG3378 Location: 42735-43764 bp Feature: domain Description: COG3378 Location: 42735-4376 4 bp Feature: gene Location: 44408-46114 bp Feature: RT Description: RVT_N Location: 44465-44708 bp Feature: RT Description: RVT_N Location: 4446 5-44708 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 44756-45416 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 44756 -45416 bp Feature: domain Description: GIIM Note: maturase Location: 45470-45701 bp Feature: domain Description: GIIM Note: maturase Location: 45470-45701 bp Feature: domain Description: HNHc Note: nucleases Location: 45878-46085 bp Feature: domain Description: HNHc Note: nucleases Location: 45878-46 085 bp Feature: gene Location: 46900-47145 bp Feature: domain Description: HTH_XRE Location: 46960-47125 bp Feature: domain Description: HTH_XRE Location: 46 96 0-47125 bp Feature: gene Location: 47417-48196 bp Feature: gene Location: 53351-53980 bp Feature: domain Description: INT_FimBE_like Location: 53447-53966 bp Feature: domain Description: INT_FimBE_like Location: 53447-5396 6 bp Feature: gene Location: 54268-57096 bp Feature: domain Description: DUF4158 Location: 54271-54610 bp Feature: domain Description: DUF4158 Location: 54271-546 10 bp Feature: domain Description: DDE_Tnp_Tn3 Location: 55861-57022 bp Feature: domain Description: DDE_Tnp_Tn3 Location: 5586 1-57022 bp Feature: gene Location: 57190-58971 bp Feature: RT Description: RVT_N Location: 57199-57445 bp Feature: RT Description: RVT_N Location: 57199-57445 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 57487-58156 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 57487-58156 bp Feature: domain Description: GIIM Note: maturase Location: 58261-58489 bp Feature: domain Description: GIIM Note: maturase Location: 5826 1-58489 bp Feature: domain Description: McrA Location: 58513-58855 bp Feature: domain Description: McrA Location: 58513-58855 bp Feature: gene Location: 59604-59894 bp Feature: gene Location: 60215-62233 bp Feature: domain Description: PAS Location: 60227-60605 bp Feature: domain Description: PAS Location: 6 0227-6 06 05 bp Feature: domain Description: FhlA Location: 60620-61235 bp Feature: domain Description: FhlA Location: 6 06 20-6 1235 bp Feature: domain Description: BaeS Location: 61310-62222 bp Feature: domain Description: BaeS Location: 6 1310-6 2222 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3378 (Phage- or plasmid-associated DNA primase ), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507), HTH_XRE (smart00530), INT_FimBE_like (cd01197), DUF4158 (pfam13700), DDE_Tnp_Tn3 (pfam01526), McrA (COG4058)
PAS (smart00091), FhlA (COG3604), BaeS (COG0642)

Seq: JRFE01000035.1 Myxosarcina sp. GI1 contig_34, whole genome shotgun sequence (55407 bp)
Overview 1 RT 1: 16523-20658 bp Neighborhood of RT #1 [16523, 20658] KOG4178 AraC RVT-GII GIIM HNHc RVT_N Feature: gene Location: 16523-17269 bp Feature: domain Description: KOG4178 Location: 16526-17255 bp Feature: domain Description: KOG417 8 Location: 16526-17 255 bp Feature: gene Location: 17300-18229 bp Feature: domain Description: AraC Location: 17909-18215 bp Feature: domain Description: AraC Location: 17 909-18215 bp Feature: gene Location: 18284-19570 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 18290-18725 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 18290-187 25 bp Feature: domain Description: GIIM Note: maturase Location: 18824-19058 bp Feature: domain Description: GIIM Note: maturase Location: 18824-19058 bp Feature: domain Description: HNHc Note: nucleases Location: 19253-19412 bp Feature: domain Description: HNHc Note: nucleases Location: 19253-19412 bp Feature: gene Location: 19726-20094 bp Feature: RT Description: RVT_N Location: 19762-20008 bp Feature: RT Description: RVT_N Location: 197 62-20008 bp Feature: gene Location: 20413-20658 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT KOG4178 (KOG4178, Soluble epoxide hydrolase ), AraC (COG2207), RVT-GII, GIIM (pfam08388), HNHc (smart00507), RVT_N (pfam13655)

Seq: JRFE01000043.1 Myxosarcina sp. GI1 contig_42, whole genome shotgun sequence (91105 bp)
Overview 1 RT 1: 27296-31377 bp Neighborhood of RT #1 [27296, 31377] PRK09256 RVT-GII GIIM HNH RVT_N RVT-GII Feature: gene Location: 27296-27478 bp Feature: gene Location: 27490-27906 bp Feature: domain Description: PRK09256 Location: 27493-27898 bp Feature: domain Description: PRK09256 Location: 27493-278 98 bp Feature: gene Location: 28043-29164 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 28046-28304 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 28 046-28 304 bp Feature: domain Description: GIIM Note: maturase Location: 28403-28637 bp Feature: domain Description: GIIM Note: maturase Location: 28 403-28 637 bp Feature: domain Description: HNH Note: nucleases Location: 28850-28982 bp Feature: domain Description: HNH Note: nucleases Location: 28 8 50-28 98 2 bp Feature: gene Location: 29528-30319 bp Feature: RT Description: RVT_N Location: 29615-29861 bp Feature: RT Description: RVT_N Location: 29615-298 61 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 29903-30275 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 29903-30275 bp Feature: gene Location: 30709-30900 bp Feature: gene Location: 31171-31377 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK09256 (aminoacyl-tRNA hydrolase), RVT-GII, GIIM (pfam08388), HNH (pfam01844), RVT_N (pfam13655)

Seq: JRFE01000044.1 Myxosarcina sp. GI1 contig_43, whole genome shotgun sequence (6815 bp)
Overview 1 RT 1: 3-3220 bp Neighborhood of RT #1 [3, 3249] RVT_N RVT-GII AcrR PRK06753 Feature: gene Location: 3-1094 bp Feature: RT Description: RVT_N Location: 60-303 bp Feature: RT Description: RVT_N Location: 60-303 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 351-1011 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 351-1011 bp Feature: gene Location: 1647-1898 bp Feature: domain Description: AcrR Location: 1683-1836 bp Feature: domain Description: AcrR Location: 1683-1836 bp Feature: gene Location: 2134-3249 bp Feature: domain Description: PRK06753 Location: 2137-3220 bp Feature: domain Description: PRK06753 Location: 2137-3220 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT AcrR (COG1309), PRK06753 (hypothetical protein; Provisional), RVT_N (pfam13655), RVT-GII

Seq: JRFE01000050.1 Myxosarcina sp. GI1 contig_49, whole genome shotgun sequence (150016 bp)
Overview 1 RT 1: 6830-13244 bp Neighborhood of RT #1 [6830, 13342] DDE_Tnp_1 RVT-GII GIIM HNHc RVT-GII GIIM HNHc RVT_N RVT-GII DDE_Tnp_1_3 HTH_Crp_2 Feature: gene Location: 6830-6997 bp Feature: gene Location: 7130-7429 bp Feature: domain Description: DDE_Tnp_1 Location: 7199-7379 bp Feature: domain Description: DDE_Tnp_1 Location: 7199-7379 bp Feature: gene Location: 7515-8768 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7623-7953 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7623-7953 bp Feature: domain Description: GIIM Note: maturase Location: 8055-8280 bp Feature: domain Description: GIIM Note: maturase Location: 8055-8280 bp Feature: domain Description: HNHc Note: nucleases Location: 8496-8646 bp Feature: domain Description: HNHc Note: nucleases Location: 8496-8646 bp Feature: gene Location: 8771-10432 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9053-9737 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9053-9737 bp Feature: domain Description: GIIM Note: maturase Location: 9803-10028 bp Feature: domain Description: GIIM Note: maturase Location: 9803-10 028 bp Feature: domain Description: HNHc Note: nucleases Location: 10253-10406 bp Feature: domain Description: HNHc Note: nucleases Location: 10 253-10 406 bp Feature: gene Location: 10562-10852 bp Feature: gene Location: 11019-11753 bp Feature: RT Description: RVT_N Location: 11064-11310 bp Feature: RT Description: RVT_N Location: 110 64-11310 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 11352-11727 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 11352-11727 bp Feature: gene Location: 12291-12794 bp Feature: domain Description: DDE_Tnp_1_3 Location: 12309-12690 bp Feature: domain Description: DDE_Tnp_1_3 Location: 12309-12690 bp Feature: gene Location: 12815-13342 bp Feature: domain Description: HTH_Crp_2 Location: 13049-13244 bp Feature: domain Description: HTH_Crp_2 Location: 13049-13244 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DDE_Tnp_1 (pfam01609), RVT-GII, GIIM (pfam08388), HNHc (smart00507), RVT_N (pfam13655), DDE_Tnp_1_3 (pfam13612), HTH_Crp_2 (pfam13545)