myRT

myRT report for GCA_000757365.1_BHX_1

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Seq: KN150987.1 Burkholderia cepacia strain DWS 16B-4 genomic scaffold scaffold2, whole genome shotgun sequence (3205784 bp)
Overview 1 RT 1: 1086414-1093350 bp 2 RT 2: 1571571-1574247 bp 3 RT 3: 1602467-1609347 bp 4 RT 4: 3140433-3148220 bp Neighborhood of RT #1 [1086414, 1093430] FUSC RVT-GII GIIM IS285 DmpA Neighborhood of RT #2 [1571571, 1574247] Avd_like RVT-DGRs Neighborhood of RT #3 [1602467, 1609403] Gmd GDP_MD_SDR_e RVT-GII GIIM PRK08133 PRK09246 Neighborhood of RT #4 [3140433, 3148267] ALDH_F7_AASADH RVT-GII GIIM MscK MFS_SV2_like Feature: gene Location: 1086414-1088597 bp Feature: domain Description: FUSC Location: 1086531-1088580 bp Feature: domain Description: FUSC Location: 1 086531 -1 088580 bp Feature: gene Location: 1088734-1088946 bp Feature: gene Location: 1089563-1090822 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1089818-1090433 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 08981 8-1 090433 bp Feature: domain Description: GIIM Note: maturase Location: 1090493-1090694 bp Feature: domain Description: GIIM Note: maturase Location: 1 090493-1 090694 bp Feature: gene Location: 1090841-1092115 bp Feature: domain Description: IS285 Location: 1090919-1092101 bp Feature: domain Description: IS285 Location: 1 09091 9-1 0921 01 bp Feature: gene Location: 1092321-1093430 bp Feature: domain Description: DmpA Location: 1092351-1093350 bp Feature: domain Description: DmpA Location: 1 092351 -1 093350 bp Feature: gene Location: 1571571-1572035 bp Feature: gene Location: 1572050-1572439 bp Feature: domain Description: Avd_like Location: 1572077-1572383 bp Feature: domain Description: Avd_like Location: 1 572077-1 572383 bp Feature: gene Location: 1572909-1573766 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 1572912-1573623 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 1 57291 2-1 573623 bp Feature: gene Location: 1573775-1574014 bp Feature: gene Location: 1574011-1574247 bp Feature: gene Location: 1602467-1603513 bp Feature: domain Description: Gmd Location: 1602482-1603499 bp Feature: domain Description: Gmd Location: 1 602482-1 603499 bp Feature: gene Location: 1603500-1604465 bp Feature: domain Description: GDP_MD_SDR_e Location: 1603536-1604433 bp Feature: domain Description: GDP_MD_SDR_e Location: 1 603536-1 604433 bp Feature: gene Location: 1604585-1605874 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1604840-1605455 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 604840-1 605455 bp Feature: domain Description: GIIM Note: maturase Location: 1605515-1605716 bp Feature: domain Description: GIIM Note: maturase Location: 1 60551 5-1 60571 6 bp Feature: gene Location: 1606421-1607611 bp Feature: domain Description: PRK08133 Location: 1606427-1607606 bp Feature: domain Description: PRK081 33 Location: 1 606427-1 607606 bp Feature: gene Location: 1607871-1609403 bp Feature: domain Description: PRK09246 Location: 1607874-1609347 bp Feature: domain Description: PRK09246 Location: 1 607874-1 609347 bp Feature: gene Location: 3140433-3141944 bp Feature: domain Description: ALDH_F7_AASADH Location: 3140487-3141903 bp Feature: domain Description: ALDH_F7_AASADH Location: 31 40487-31 41 903 bp Feature: gene Location: 3141896-3142039 bp Feature: gene Location: 3142505-3143794 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3142760-3143375 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 31 42760-31 43375 bp Feature: domain Description: GIIM Note: maturase Location: 3143435-3143636 bp Feature: domain Description: GIIM Note: maturase Location: 31 43435-31 43636 bp Feature: gene Location: 3143938-3146400 bp Feature: domain Description: MscK Location: 3144016-3146359 bp Feature: domain Description: MscK Location: 31 4401 6-31 46359 bp Feature: gene Location: 3146849-3148267 bp Feature: domain Description: MFS_SV2_like Location: 3146969-3148220 bp Feature: domain Description: MFS_SV2_like Location: 31 46969-31 48220 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT FUSC (pfam04632), RVT-GII, GIIM (pfam08388), IS285 (COG3328), DmpA (COG3191), Avd_like (cd16376), RVT-DGRs, Gmd (COG1089), GDP_MD_SDR_e (cd05260), PRK08133 (O-succinylhomoserine sulfhydrylase; Validated)
PRK09246 (amidophosphoribosyltransferase; Provisional), ALDH_F7_AASADH (cd07130), MscK (COG3264), MFS_SV2_like (cd17316)

Seq: KN150986.1 Burkholderia cepacia strain DWS 16B-4 genomic scaffold scaffold1, whole genome shotgun sequence (3723449 bp)
Overview 1 RT 1: 895063-902866 bp 2 RT 2: 1135602-1142277 bp 3 RT 3: 1503772-1508910 bp Neighborhood of RT #1 [895063, 902871] PRK12511 COG4315 RVT-GII GIIM DadA Neighborhood of RT #2 [1135602, 1142282] PRK09054 RpiR RVT-GII GIIM COG1981 proA Neighborhood of RT #3 [1503772, 1508978] PRK14673 RsmI RVT-GII GIIM RlpA YcbL-like_MBL-fold Feature: gene Location: 895063-895578 bp Feature: domain Description: PRK12511 Location: 895075-895570 bp Feature: domain Description: PRK12 511 Location: 895075-895570 bp Feature: gene Location: 895606-895965 bp Feature: domain Description: COG4315 Location: 895624-895963 bp Feature: domain Description: COG4315 Location: 89562 4-895963 bp Feature: gene Location: 896246-897535 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 896501-897116 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 896501-897116 bp Feature: domain Description: GIIM Note: maturase Location: 897176-897377 bp Feature: domain Description: GIIM Note: maturase Location: 897176-897377 bp Feature: gene Location: 898143-901115 bp Feature: gene Location: 901627-902871 bp Feature: domain Description: DadA Location: 901630-902866 bp Feature: domain Description: DadA Location: 901630-902 866 bp Feature: gene Location: 1135602-1137458 bp Feature: domain Description: PRK09054 Location: 1135614-1137417 bp Feature: domain Description: PRK09054 Location: 1135614-1137417 bp Feature: gene Location: 1137753-1138601 bp Feature: domain Description: RpiR Location: 1137756-1138578 bp Feature: domain Description: RpiR Location: 1137756-1138578 bp Feature: gene Location: 1138711-1140000 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1138966-1139581 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1138966-1139581 bp Feature: domain Description: GIIM Note: maturase Location: 1139641-1139842 bp Feature: domain Description: GIIM Note: maturase Location: 1139641-1139842 bp Feature: gene Location: 1140565-1140981 bp Feature: domain Description: COG1981 Location: 1140568-1140979 bp Feature: domain Description: COG1981 Location: 1140568-1140979 bp Feature: gene Location: 1141011-1142282 bp Feature: domain Description: proA Location: 1141023-1142277 bp Feature: domain Description: proA Location: 114102 3-1142 2 77 bp Feature: gene Location: 1503772-1504200 bp Feature: domain Description: PRK14673 Location: 1503775-1504192 bp Feature: domain Description: PRK14673 Location: 1503775-1504192 bp Feature: gene Location: 1504247-1505134 bp Feature: domain Description: RsmI Location: 1504295-1505108 bp Feature: domain Description: RsmI Location: 15042 95-1505108 bp Feature: gene Location: 1505242-1506531 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1505497-1506112 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1505497-1506112 bp Feature: domain Description: GIIM Note: maturase Location: 1506172-1506373 bp Feature: domain Description: GIIM Note: maturase Location: 1506172 -1506373 bp Feature: gene Location: 1507067-1507678 bp Feature: domain Description: RlpA Location: 1507139-1507643 bp Feature: domain Description: RlpA Location: 1507139-1507643 bp Feature: gene Location: 1508334-1508978 bp Feature: domain Description: YcbL-like_MBL-fold Location: 1508346-1508910 bp Feature: domain Description: YcbL-like_MBL-fold Location: 1508346-1508910 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK12511 (RNA polymerase sigma factor; Provisional), COG4315 (Predicted lipoprotein with conserved Yx(FWY)xxD motif (function unknown) ), RVT-GII, GIIM (pfam08388), DadA (COG0665), PRK09054 (phosphogluconate dehydratase; Validated), RpiR (COG1737), COG1981 (Uncharacterized membrane protein ), proA (TIGR00407), PRK14673 (hypothetical protein; Provisional)
RsmI (COG0313), RlpA (COG0797), YcbL-like_MBL-fold (cd07737)

Seq: KN150988.1 Burkholderia cepacia strain DWS 16B-4 genomic scaffold scaffold3, whole genome shotgun sequence (1183030 bp)
Overview 1 RT 1: 918988-924337 bp Neighborhood of RT #1 [918988, 924360] his_ut_repres FIN RVT-Retrons Histone_HNS MFS_MucK Feature: gene Location: 918988-919743 bp Feature: domain Description: his_ut_repres Location: 919066-919738 bp Feature: domain Description: his_ut_repres Location: 919066-91973 8 bp Feature: gene Location: 919978-920550 bp Feature: domain Description: FIN Location: 920164-920515 bp Feature: domain Description: FIN Location: 920164-920515 bp Feature: gene Location: 920804-922153 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 921269-921905 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 921269-921905 bp Feature: gene Location: 922479-922808 bp Feature: domain Description: Histone_HNS Location: 922500-922737 bp Feature: domain Description: Histone_HNS Location: 922500-92273 7 bp Feature: gene Location: 923164-924360 bp Feature: domain Description: MFS_MucK Location: 923203-924337 bp Feature: domain Description: MFS_MucK Location: 923 203 -9243 3 7 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT his_ut_repres (TIGR02018), FIN (cd16389), RVT-Retrons, Histone_HNS (pfam00816), MFS_MucK (cd17371)