myRT

myRT report for GCA_000758185.1_LTH5448

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Seq: JOOG01000034.1 Lactobacillus reuteri strain LTH5448 scaffold29.1, whole genome shotgun sequence (12461 bp)
Overview 1 RT 1: 1-3316 bp Neighborhood of RT #1 [1, 3837] RVT-GII LysM PEPCK_ATP Feature: gene Location: 1-567 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 319-565 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 31 9-565 bp Feature: gene Location: 1101-1808 bp Feature: domain Description: LysM Location: 1203-1341 bp Feature: domain Description: LysM Location: 1 203-1 341 bp Feature: gene Location: 2137-3837 bp Feature: domain Description: PEPCK_ATP Location: 3064-3316 bp Feature: domain Description: PEPCK_ATP Location: 3064-331 6 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT LysM (smart00257), RVT-GII, PEPCK_ATP (pfam01293)

Seq: JOOG01000029.1 Lactobacillus reuteri strain LTH5448 scaffold6.1, whole genome shotgun sequence (149778 bp)
Overview 1 RT 1: 117688-123319 bp Neighborhood of RT #1 [117688, 123333] ThrE ThrE HTH_1 PBP2_MleR RVT-GII GIIM HTH_ARSR Cad Feature: gene Location: 117688-119055 bp Feature: domain Description: ThrE Location: 117841-118576 bp Feature: domain Description: ThrE Location: 117841-118576 bp Feature: domain Description: ThrE Location: 118642-119017 bp Feature: domain Description: ThrE Location: 118642 -119017 bp Feature: gene Location: 119111-119998 bp Feature: domain Description: HTH_1 Location: 119123-119267 bp Feature: domain Description: HTH_1 Location: 11912 3-1192 67 bp Feature: domain Description: PBP2_MleR Location: 119384-119969 bp Feature: domain Description: PBP2 _MleR Location: 119384-119969 bp Feature: gene Location: 120195-121577 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 120513-121131 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 12 0513-12 1131 bp Feature: domain Description: GIIM Note: maturase Location: 121185-121413 bp Feature: domain Description: GIIM Note: maturase Location: 12 1185-12 1413 bp Feature: gene Location: 122349-122699 bp Feature: domain Description: HTH_ARSR Location: 122502-122691 bp Feature: domain Description: HTH_ARSR Location: 12 2 502 -12 2 691 bp Feature: gene Location: 122716-123333 bp Feature: domain Description: Cad Location: 122752-123319 bp Feature: domain Description: Cad Location: 12 2 752 -12 3319 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT ThrE (pfam06738), HTH_1 (pfam00126), PBP2_MleR (cd08437), RVT-GII, GIIM (pfam08388), HTH_ARSR (smart00418), Cad (pfam03596)

Seq: JOOG01000015.1 Lactobacillus reuteri strain LTH5448 scaffold25.1, whole genome shotgun sequence (20656 bp)
Overview 1 RT 1: 2701-8350 bp Neighborhood of RT #1 [2701, 8400] galactose_mutarotase_like RVT-GII GIIM PerM Cfa Feature: gene Location: 2701-2901 bp Feature: gene Location: 3019-4056 bp Feature: domain Description: galactose_mutarotase_like Location: 3073-4045 bp Feature: domain Description: galactose_mutarotase_like Location: 3 073 -4045 bp Feature: gene Location: 4163-5545 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4481-5099 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4481-5099 bp Feature: domain Description: GIIM Note: maturase Location: 5153-5381 bp Feature: domain Description: GIIM Note: maturase Location: 5153 -53 81 bp Feature: gene Location: 6020-7054 bp Feature: domain Description: PerM Location: 6059-7022 bp Feature: domain Description: PerM Location: 6059-7022 bp Feature: gene Location: 7225-8400 bp Feature: domain Description: Cfa Location: 7528-8350 bp Feature: domain Description: Cfa Location: 7528-83 50 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT galactose_mutarotase_like (cd09019), RVT-GII, GIIM (pfam08388), PerM (COG0628), Cfa (COG2230)