myRT

myRT report for GCA_000759025.1_ASM75902v1

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Seq: JPOS01000073.1 Phaeodactylibacter xiamenensis strain KD52 Scaffold1_73, whole genome shotgun sequence (1270 bp)
Overview 1 RT 1: 1-1015 bp Neighborhood of RT #1 [1, 1176] RVT-GII GIIM Feature: gene Location: 1-1176 bp Ori: KGE86770.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 121-742 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 21 -742 bp Feature: domain Description: GIIM Note: maturase Location: 784-1015 bp Feature: domain Description: GIIM Note: maturase Location: 784-1 01 5 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: JPOS01000002.1 Phaeodactylibacter xiamenensis strain KD52 Scaffold1_2, whole genome shotgun sequence (172435 bp)
Overview 1 RT 1: 162866-167661 bp Neighborhood of RT #1 [162866, 167661] GCD OmpA RVT-GII GIIM Feature: gene Location: 162866-164056 bp Ori: KGE89868.1 Feature: domain Description: GCD Location: 162899-164051 bp Feature: domain Description: GCD Location: 162 899-164051 bp Feature: gene Location: 164322-165527 bp Ori: KGE89869.1 Feature: domain Description: OmpA Location: 165078-165507 bp Feature: domain Description: OmpA Location: 165078-165507 bp Feature: gene Location: 165623-166891 bp Ori: KGE89870.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 165836-166457 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 165836-166457 bp Feature: domain Description: GIIM Note: maturase Location: 166499-166730 bp Feature: domain Description: GIIM Note: maturase Location: 166499-166730 bp Feature: gene Location: 167047-167226 bp Feature: gene Location: 167440-167661 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT GCD (cd01151), OmpA (pfam00691), RVT-GII, GIIM (pfam08388)

Seq: JPOS01000100.1 Phaeodactylibacter xiamenensis strain KD52 Scaffold2_15, whole genome shotgun sequence (31490 bp)
Overview 1 RT 1: 28902-31318 bp Neighborhood of RT #1 [28902, 31479] Disulph_isomer PdxH RVT-GII GIIM Feature: gene Location: 28902-29315 bp Ori: KGE84937.1 Feature: domain Description: Disulph_isomer Location: 28908-29313 bp Feature: domain Description: Disulph_isomer Location: 28908-293 13 bp Feature: gene Location: 29391-30044 bp Ori: KGE84938.1 Feature: domain Description: PdxH Location: 29409-30042 bp Feature: domain Description: PdxH Location: 29409-3 0042 bp Feature: gene Location: 30211-31479 bp Ori: KGE84939.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 30424-31045 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3 0424-3 1045 bp Feature: domain Description: GIIM Note: maturase Location: 31087-31318 bp Feature: domain Description: GIIM Note: maturase Location: 3 1087-3 13 18 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Disulph_isomer (pfam06491), PdxH (COG0259), RVT-GII, GIIM (pfam08388)

Seq: JPOS01000038.1 Phaeodactylibacter xiamenensis strain KD52 Scaffold1_38, whole genome shotgun sequence (381373 bp)
Overview 1 RT 1: 278758-280653 bp Neighborhood of RT #1 [278758, 280814] RVT-GII GIIM Feature: gene Location: 278758-278997 bp Feature: gene Location: 279211-279390 bp Feature: gene Location: 279546-280814 bp Ori: KGE87279.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 279759-280380 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 279759-280380 bp Feature: domain Description: GIIM Note: maturase Location: 280422-280653 bp Feature: domain Description: GIIM Note: maturase Location: 2804 22-280653 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: JPOS01000080.1 Phaeodactylibacter xiamenensis strain KD52 Scaffold1_80, whole genome shotgun sequence (61742 bp)
Overview 1 RT 1: 54207-58573 bp Neighborhood of RT #1 [54207, 58608] RpoE RVT-Retrons Cas1_I-II-III Cas2 Feature: gene Location: 54207-54824 bp Ori: KGE86305.1 Feature: domain Description: RpoE Location: 54285-54744 bp Feature: domain Description: RpoE Location: 5 4285 -5 4744 bp Feature: gene Location: 54878-55261 bp Feature: gene Location: 55317-56360 bp Ori: KGE86307.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 55467-56046 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 5 5 467-5 6046 bp Feature: gene Location: 56372-57349 bp Ori: KGE86308.1 Feature: domain Description: Cas1_I-II-III Location: 56375-57332 bp Feature: domain Description: Cas1_I-II-III Location: 5 6375 -5 7332 bp Feature: gene Location: 58306-58608 bp Ori: KGE86309.1 Feature: domain Description: Cas2 Location: 58309-58573 bp Feature: domain Description: Cas2 Location: 5 8309-5 85 73 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RpoE (COG3343), RVT-Retrons, Cas1_I-II-III (cl00656), Cas2 (COG3512)

Seq: JPOS01000095.1 Phaeodactylibacter xiamenensis strain KD52 Scaffold2_10, whole genome shotgun sequence (1327 bp)
Overview 1 RT 1: 1-1327 bp Neighborhood of RT #1 [1, 1327] RVT-GII Feature: gene Location: 1-576 bp Ori: KGE85038.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 214-565 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 214-56 5 bp Feature: gene Location: 1125-1327 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII

Seq: JPOS01000074.1 Phaeodactylibacter xiamenensis strain KD52 Scaffold1_74, whole genome shotgun sequence (2503 bp)
Overview 1 RT 1: 1-2331 bp Neighborhood of RT #1 [1, 2345] RVT-GII Feature: gene Location: 1-1826 bp Feature: gene Location: 2025-2345 bp Ori: KGE86769.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2181-2331 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2181-2331 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII