myRT

myRT report for GCA_000759245.1_04_NF40_HMP647v01

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Seq: JRNQ01000035.1 Prevotella bivia DNF00320 contig035, whole genome shotgun sequence (47674 bp)
Overview 1 RT 1: 18272-27814 bp Neighborhood of RT #1 [18272, 28275] RVT_N RVT-GII GIIM DUF4134 RVT_N RVT-GII GIIM DUF4141 Feature: gene Location: 18272-19012 bp Feature: gene Location: 19569-19778 bp Feature: gene Location: 20060-21715 bp Feature: RT Description: RVT_N Location: 20117-20354 bp Feature: RT Description: RVT_N Location: 201 1 7-20354 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 20405-21053 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 20405-21 053 bp Feature: domain Description: GIIM Note: maturase Location: 21110-21341 bp Feature: domain Description: GIIM Note: maturase Location: 21 1 1 0-21 341 bp Feature: gene Location: 21712-21954 bp Feature: domain Description: DUF4134 Location: 21859-21949 bp Feature: domain Description: DUF41 34 Location: 21 859-21 949 bp Feature: gene Location: 22087-23109 bp Feature: gene Location: 23730-25412 bp Feature: RT Description: RVT_N Location: 23793-24036 bp Feature: RT Description: RVT_N Location: 23793-24036 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 24081-24729 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 24081 -24729 bp Feature: domain Description: GIIM Note: maturase Location: 24780-25014 bp Feature: domain Description: GIIM Note: maturase Location: 24780-2501 4 bp Feature: gene Location: 27278-27601 bp Feature: gene Location: 27646-28275 bp Feature: domain Description: DUF4141 Location: 27658-27814 bp Feature: domain Description: DUF41 41 Location: 27658-2781 4 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), DUF4134 (pfam13572), DUF4141 (pfam13605)

Seq: JRNQ01000142.1 Prevotella bivia DNF00320 contig142, whole genome shotgun sequence (1785 bp)
Overview 1 RT 1: 572-1785 bp Neighborhood of RT #1 [572, 1785] RVT-GII Feature: gene Location: 572-1066 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 836-1001 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 836-1001 bp Feature: gene Location: 1426-1785 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII

Seq: JRNQ01000136.1 Prevotella bivia DNF00320 contig136, whole genome shotgun sequence (3027 bp)
Overview 1 RT 1: 1056-2520 bp Neighborhood of RT #1 [1056, 2867] RVT-GII Intron_maturas2 Feature: gene Location: 1056-2867 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1320-2142 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 13 20-2142 bp Feature: domain Description: Intron_maturas2 Location: 2211-2520 bp Feature: domain Description: Intron_maturas2 Location: 2211-2520 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Intron_maturas2 (pfam01348)

Seq: JRNQ01000027.1 Prevotella bivia DNF00320 contig027, whole genome shotgun sequence (9314 bp)
Overview 1 RT 1: 682-5268 bp Neighborhood of RT #1 [682, 5291] RVT_N RVT-GII GIIM AbiEii AbiEi_3_N AbiEi_3 Feature: gene Location: 682-2352 bp Feature: RT Description: RVT_N Location: 736-979 bp Feature: RT Description: RVT_N Location: 736-979 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1024-1672 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1024 -1672 bp Feature: domain Description: GIIM Note: maturase Location: 1726-1957 bp Feature: domain Description: GIIM Note: maturase Location: 1726-1957 bp Feature: gene Location: 3629-4534 bp Feature: domain Description: AbiEii Location: 3668-4163 bp Feature: domain Description: AbiEii Location: 3668-4 163 bp Feature: gene Location: 4527-5291 bp Feature: domain Description: AbiEi_3_N Location: 4545-4818 bp Feature: domain Description: AbiEi_3_N Location: 4 54 5-4 818 bp Feature: domain Description: AbiEi_3 Location: 4833-5268 bp Feature: domain Description: AbiEi_3 Location: 4 833-5268 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT AbiEii (pfam08843), AbiEi_3_N (pfam17194), AbiEi_3 (pfam11459), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388)

Seq: JRNQ01000134.1 Prevotella bivia DNF00320 contig134, whole genome shotgun sequence (2415 bp)
Overview 1 RT 1: 116-1397 bp Neighborhood of RT #1 [116, 1783] RVT_N RVT-GII GIIM Feature: gene Location: 116-1783 bp Feature: RT Description: RVT_N Location: 173-416 bp Feature: RT Description: RVT_N Location: 173-416 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 461-1109 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 461-1109 bp Feature: domain Description: GIIM Note: maturase Location: 1166-1397 bp Feature: domain Description: GIIM Note: maturase Location: 1166-1397 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388)