myRT

myRT report for GCA_000759315.1_04_NF40_HMP9302v01

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Seq: JRNU01000111.1 Prevotella amnii DNF00058 contig111, whole genome shotgun sequence (1686 bp)
Overview 1 RT 1: 146-1364 bp Neighborhood of RT #1 [146, 1552] RVT-GII GIIM Feature: gene Location: 146-1552 bp Ori: KGF49658.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 488-1106 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 488-1 1 06 bp Feature: domain Description: GIIM Note: maturase Location: 1160-1364 bp Feature: domain Description: GIIM Note: maturase Location: 1 1 60-1 364 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: JRNU01000054.1 Prevotella amnii DNF00058 contig054, whole genome shotgun sequence (21612 bp)
Overview 1 RT 1: 7621-14960 bp Neighborhood of RT #1 [7621, 15019] dnaG Toprim_2 Mob_Pre Mob_Pre RVT-UG3 RVT-UG8 SpoT Feature: gene Location: 7621-8562 bp Ori: KGF51033.1 Feature: domain Description: dnaG Location: 7717-8056 bp Feature: domain Description: dnaG Location: 7717-8056 bp Feature: domain Description: Toprim_2 Location: 8227-8488 bp Feature: domain Description: Toprim_2 Location: 82 2 7-8488 bp Feature: gene Location: 8896-10152 bp Ori: KGF51034.1 Feature: domain Description: Mob_Pre Location: 8902-9349 bp Feature: domain Description: Mob_Pre Location: 8902 -9349 bp Feature: domain Description: Mob_Pre Location: 9379-9529 bp Feature: domain Description: Mob_Pre Location: 9379-952 9 bp Feature: gene Location: 10380-11840 bp Ori: KGF51035.1 Feature: RT Description: RVT-UG3 Note: UG3 RT Location: 10836-11370 bp Feature: RT Description: RVT-UG3 Note: UG3 RT Location: 10836-11370 bp Feature: gene Location: 11831-14020 bp Ori: KGF51036.1 Feature: RT Description: RVT-UG8 Note: UG8 RT Location: 12452-12905 bp Feature: RT Description: RVT-UG8 Note: UG8 RT Location: 12 452 -12 905 bp Feature: gene Location: 14528-15019 bp Ori: KGF51037.1 Feature: domain Description: SpoT Location: 14540-14960 bp Feature: domain Description: SpoT Location: 14540-14960 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT dnaG (TIGR01391), Toprim_2 (pfam13155), Mob_Pre (pfam01076), RVT-UG3, RVT-UG8, SpoT (COG0317)

Seq: JRNU01000085.1 Prevotella amnii DNF00058 contig085, whole genome shotgun sequence (9409 bp)
Overview 1 RT 1: 3248-9051 bp Neighborhood of RT #1 [3248, 9051] WYL WG_beta_rep WG_beta_rep RVT-Retrons Feature: gene Location: 3248-4324 bp Ori: KGF50220.1 Feature: domain Description: WYL Location: 3734-4286 bp Feature: domain Description: WYL Location: 3 73 4-4286 bp Feature: gene Location: 4369-4992 bp Ori: KGF50221.1 Feature: domain Description: WG_beta_rep Location: 4435-4528 bp Feature: domain Description: WG_beta_rep Location: 443 5-4528 bp Feature: domain Description: WG_beta_rep Location: 4672-4747 bp Feature: domain Description: WG_beta_rep Location: 4672-4747 bp Feature: gene Location: 5374-6846 bp Ori: KGF50222.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 5572-6187 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 5572-6187 bp Feature: gene Location: 6843-7766 bp Feature: gene Location: 7906-9051 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT WYL (pfam13280), WG_beta_rep (pfam14903), RVT-Retrons