myRT

myRT report for GCA_000760695.2_ASM76069v2

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Seq: JHEG02000037.1 Tolypothrix bouteillei VB521301 scaffold_4, whole genome shotgun sequence (880662 bp)
Overview 1 RT 1: 583248-591166 bp Neighborhood of RT #1 [583248, 591282] group_II_RT_mat RVT-UG19 YprA YprA FliS Feature: gene Location: 583248-583547 bp Feature: gene Location: 583630-584964 bp Feature: gene Location: 584957-585859 bp Ori: KIE12250.1 Feature: domain Description: group_II_RT_mat Note: maturase Location: 585005-585263 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 585005-585263 bp Feature: RT Description: RVT-UG19 Note: UG19 RT Location: 585338-585821 bp Feature: RT Description: RVT-UG1 9 Note: UG1 9 RT Location: 585338-585821 bp Feature: gene Location: 586063-590580 bp Ori: KIE12251.1 Feature: domain Description: YprA Location: 586381-587362 bp Feature: domain Description: YprA Location: 586381 -587362 bp Feature: domain Description: YprA Location: 587809-587971 bp Feature: domain Description: YprA Location: 587809-587971 bp Feature: gene Location: 590764-591282 bp Ori: KIE12252.1 Feature: domain Description: FliS Location: 591019-591166 bp Feature: domain Description: FliS Location: 591 01 9-591 1 66 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT group_II_RT_mat (TIGR04416), RVT-UG19, YprA (COG1205), FliS (pfam02561)

Seq: JHEG02000054.1 Tolypothrix bouteillei VB521301 scaffold_7, whole genome shotgun sequence (402212 bp)
Overview 1 RT 1: 228764-229220 bp Neighborhood of RT #1 [228764, 229220] RVT_N RVT-GII Feature: gene Location: 228764-229220 bp Ori: KIE09844.1 Feature: domain Description: RVT_N Location: 228773-229019 bp Feature: domain Description: RVT_N Location: 2 2 8773-2 2 9019 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 229061-229220 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 2 9061-2 2 92 2 0 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII

Seq: JHEG02000007.1 Tolypothrix bouteillei VB521301 scaffold_17, whole genome shotgun sequence (44806 bp)
Overview 1 RT 1: 25602-29397 bp Neighborhood of RT #1 [25602, 29397] RVT_N RVT-GII GIIM McrA Feature: gene Location: 25602-25814 bp Feature: gene Location: 25808-26053 bp Feature: gene Location: 26973-28736 bp Ori: KIE13809.1 Feature: domain Description: RVT_N Location: 26985-27231 bp Feature: domain Description: RVT_N Location: 26985-2723 1 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 27273-27945 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 27273 -27945 bp Feature: domain Description: GIIM Note: maturase Location: 28032-28257 bp Feature: domain Description: GIIM Note: maturase Location: 2803 2-28257 bp Feature: domain Description: McrA Location: 28335-28644 bp Feature: domain Description: McrA Location: 283 3 5-28644 bp Feature: gene Location: 28741-28920 bp Feature: gene Location: 28975-29397 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), McrA (COG4058)

Seq: JHEG02000058.1 Tolypothrix bouteillei VB521301 scaffold_2, whole genome shotgun sequence (1987087 bp)
Overview 1 RT 1: 891311-901972 bp 2 RT 2: 1183783-1187894 bp Neighborhood of RT #1 [891311, 904545] STKc_PknB_like COG3899 BaeS RVT-Retrons WGR_DNA_ligase HEAT_2 Neighborhood of RT #2 [1183783, 1187917] TauD DUF4058 RVT_N RVT-GII RVT-GII McrA DUF4058 Feature: gene Location: 891311-891535 bp Feature: gene Location: 891735-897155 bp Ori: KIE08763.1 Feature: domain Description: STKc_PknB_like Location: 891774-892554 bp Feature: domain Description: STKc_PknB_like Location: 891774 -892554 bp Feature: domain Description: COG3899 Location: 892650-895263 bp Feature: domain Description: COG3899 Location: 892650-895263 bp Feature: domain Description: BaeS Location: 896190-897150 bp Feature: domain Description: BaeS Location: 896190-897150 bp Feature: gene Location: 897673-899082 bp Ori: KIE08764.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 898222-898840 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 898222-89884 0 bp Feature: gene Location: 899669-901309 bp Feature: gene Location: 901390-904545 bp Ori: KIE08766.1 Feature: domain Description: WGR_DNA_ligase Location: 901405-901627 bp Feature: domain Description: WGR_DNA_ligase Location: 9014 05-901627 bp Feature: domain Description: HEAT_2 Location: 901717-901972 bp Feature: domain Description: HEAT_2 Location: 901717-901972 bp Feature: gene Location: 1183783-1184664 bp Ori: KIE08946.1 Feature: domain Description: TauD Location: 1183798-1184626 bp Feature: domain Description: TauD Location: 1183798-1184 626 bp Feature: gene Location: 1184946-1185737 bp Ori: KIE08947.1 Feature: domain Description: DUF4058 Location: 1184949-1185543 bp Feature: domain Description: DUF4 058 Location: 1184 94 9-118554 3 bp Feature: gene Location: 1185628-1187139 bp Ori: KIE08948.1 Feature: domain Description: RVT_N Location: 1185664-1185910 bp Feature: domain Description: RVT_N Location: 1185664 -1185910 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1185961-1186387 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1185961-1186387 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1186387-1186555 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1186387-1186555 bp Feature: domain Description: McrA Location: 1186786-1187110 bp Feature: domain Description: McrA Location: 1186786-1187110 bp Feature: gene Location: 1187143-1187370 bp Feature: gene Location: 1187627-1187917 bp Ori: KIE08950.1 Feature: domain Description: DUF4058 Location: 1187735-1187894 bp Feature: domain Description: DUF4 058 Location: 1187735-1187894 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT STKc_PknB_like (cd14014), COG3899 (Predicted ATPase ), BaeS (COG0642), RVT-Retrons, WGR_DNA_ligase (cd07998), HEAT_2 (pfam13646), TauD (pfam02668), DUF4058 (pfam13267), RVT_N (pfam13655), RVT-GII
McrA (COG4058)

Seq: JHEG02000059.1 Tolypothrix bouteillei VB521301 scaffold_0, whole genome shotgun sequence (2504461 bp)
Overview 1 RT 1: 130111-134509 bp 2 RT 2: 1136748-1143225 bp Neighborhood of RT #1 [130111, 134550] RVT_N RVT-GII GIIM HNHc DUF1643 Neighborhood of RT #2 [1136748, 1143225] Pur_ac_phosph_N MPP_PAPs COG4637 COG4637 RVT_N RVT-GII GIIM HNHc DUF4276 Feature: gene Location: 130111-130329 bp Feature: gene Location: 130571-130771 bp Feature: gene Location: 130784-132430 bp Ori: KIE06563.1 Feature: domain Description: RVT_N Location: 130835-131078 bp Feature: domain Description: RVT_N Location: 130835 -131078 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 131120-131732 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 131120-131732 bp Feature: domain Description: GIIM Note: maturase Location: 131792-132017 bp Feature: domain Description: GIIM Note: maturase Location: 131792-132017 bp Feature: domain Description: HNHc Note: nucleases Location: 132242-132401 bp Feature: domain Description: HNHc Note: nucleases Location: 132242-132401 bp Feature: gene Location: 134080-134550 bp Ori: KIE06564.1 Feature: domain Description: DUF1643 Location: 134116-134509 bp Feature: domain Description: DUF1643 Location: 134116-1345 09 bp Feature: gene Location: 1136748-1138025 bp Ori: KIE07112.1 Feature: domain Description: Pur_ac_phosph_N Location: 1136817-1137051 bp Feature: domain Description: Pur_ac_phosph_N Location: 1136817-113705 1 bp Feature: domain Description: MPP_PAPs Location: 1137096-1138011 bp Feature: domain Description: MPP_PAPs Location: 1137096-1138011 bp Feature: gene Location: 1138258-1139391 bp Ori: KIE07113.1 Feature: domain Description: COG4637 Location: 1138261-1138405 bp Feature: domain Description: COG4637 Location: 1138261-1138405 bp Feature: domain Description: COG4637 Location: 1138618-1139293 bp Feature: domain Description: COG4637 Location: 1138618-1139293 bp Feature: gene Location: 1140021-1141667 bp Ori: KIE07114.1 Feature: domain Description: RVT_N Location: 1140072-1140315 bp Feature: domain Description: RVT_N Location: 1140072-1140315 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1140357-1140969 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 114035 7-1140969 bp Feature: domain Description: GIIM Note: maturase Location: 1141029-1141254 bp Feature: domain Description: GIIM Note: maturase Location: 1141029-114125 4 bp Feature: domain Description: HNHc Note: nucleases Location: 1141479-1141638 bp Feature: domain Description: HNHc Note: nucleases Location: 1141479-1141638 bp Feature: gene Location: 1141750-1142472 bp Ori: KIE08095.1 Feature: domain Description: DUF4276 Location: 1141951-1142425 bp Feature: domain Description: DUF4276 Location: 114195 1-1142425 bp Feature: gene Location: 1142935-1143225 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507), DUF1643 (pfam07799), Pur_ac_phosph_N (pfam16656), MPP_PAPs (cd00839), COG4637 (Predicted ATPase ), DUF4276 (pfam14103)

Seq: JHEG02000048.1 Tolypothrix bouteillei VB521301 scaffold_1, whole genome shotgun sequence (2323652 bp)
Overview 1 RT 1: 382981-392671 bp Neighborhood of RT #1 [382981, 392748] Cps2a LytR_C RVT_N RVT-GII GIIM McrA CheY FtsW Feature: gene Location: 382981-384381 bp Ori: KIE10192.1 Feature: domain Description: Cps2a Location: 383116-384076 bp Feature: domain Description: Cps2a Location: 383116 -384076 bp Feature: domain Description: LytR_C Location: 384112-384346 bp Feature: domain Description: LytR_C Location: 384112-384346 bp Feature: gene Location: 386233-386670 bp Feature: gene Location: 387623-389389 bp Ori: KIE11467.1 Feature: domain Description: RVT_N Location: 387635-387881 bp Feature: domain Description: RVT_N Location: 3876 35-387881 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 387923-388595 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 387923-388595 bp Feature: domain Description: GIIM Note: maturase Location: 388682-388907 bp Feature: domain Description: GIIM Note: maturase Location: 3886 82-388907 bp Feature: domain Description: McrA Location: 389003-389339 bp Feature: domain Description: McrA Location: 389003-389339 bp Feature: gene Location: 391010-391447 bp Ori: KIE10194.1 Feature: domain Description: CheY Location: 391016-391406 bp Feature: domain Description: CheY Location: 391016 -391406 bp Feature: gene Location: 391546-392748 bp Ori: KIE10195.1 Feature: domain Description: FtsW Location: 391609-392671 bp Feature: domain Description: FtsW Location: 3916 09-3926 71 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Cps2a (COG1316), LytR_C (pfam13399), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), McrA (COG4058), CheY (COG0784), FtsW (COG0772)

Seq: JHEG02000019.1 Tolypothrix bouteillei VB521301 scaffold_3, whole genome shotgun sequence (1181247 bp)
Overview 1 RT 1: 1126462-1134065 bp Neighborhood of RT #1 [1126462, 1134103] AAA_33 WYL M48B_HtpX_like RVT-CRISPR Cas1_I-II-III Cas2_I_II_III Feature: gene Location: 1126462-1128534 bp Ori: KIE13352.1 Feature: domain Description: AAA_33 Location: 1126480-1126858 bp Feature: domain Description: AAA_33 Location: 1126480-1126858 bp Feature: domain Description: WYL Location: 1127833-1128511 bp Feature: domain Description: WYL Location: 1127 833-1128511 bp Feature: gene Location: 1130101-1131132 bp Ori: KIE13353.1 Feature: domain Description: M48B_HtpX_like Location: 1130272-1131112 bp Feature: domain Description: M48B_HtpX_like Location: 113027 2-1131112 bp Feature: gene Location: 1131271-1131962 bp Ori: KIE13475.1 Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 1131478-1131961 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 113147 8-1131961 bp Feature: gene Location: 1132433-1133350 bp Ori: KIE13354.1 Feature: domain Description: Cas1_I-II-III Location: 1132439-1133312 bp Feature: domain Description: Cas1_I-II-III Location: 1132439-1133312 bp Feature: gene Location: 1133828-1134103 bp Ori: KIE13355.1 Feature: domain Description: Cas2_I_II_III Location: 1133837-1134065 bp Feature: domain Description: Cas2_I_II_III Location: 1133837 -1134065 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT AAA_33 (pfam13671), WYL (pfam13280), M48B_HtpX_like (cd07339), RVT-CRISPR, Cas1_I-II-III (cl00656), Cas2_I_II_III (cl11442)

Seq: JHEG02000046.1 Tolypothrix bouteillei VB521301 scaffold_15, whole genome shotgun sequence (49779 bp)
Overview 1 RT 1: 693-4638 bp Neighborhood of RT #1 [693, 4667] RVT_N RVT-GII GIIM HNHc Feature: gene Location: 693-1070 bp Feature: gene Location: 1360-1593 bp Feature: gene Location: 3009-4667 bp Ori: KIE11599.1 Feature: domain Description: RVT_N Location: 3060-3303 bp Feature: domain Description: RVT_N Location: 3060-3303 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3345-3969 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3345-3969 bp Feature: domain Description: GIIM Note: maturase Location: 4029-4254 bp Feature: domain Description: GIIM Note: maturase Location: 4029-4254 bp Feature: domain Description: HNHc Note: nucleases Location: 4476-4638 bp Feature: domain Description: HNHc Note: nucleases Location: 4476-4638 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507)