myRT

myRT report for GCA_000761395.1_CDF2v1

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Seq: AWTP01000001.1 Comamonas thiooxydans strain DF2 contig1, whole genome shotgun sequence (349082 bp)
Overview 1 RT 1: 344767-348877 bp Neighborhood of RT #1 [344767, 348909] KdsA pyrG RVT-GII GIIM HNH Feature: gene Location: 344767-345624 bp Feature: domain Description: KdsA Location: 344770-345604 bp Feature: domain Description: KdsA Location: 344770-345604 bp Feature: gene Location: 345775-347436 bp Feature: domain Description: pyrG Location: 345778-347416 bp Feature: domain Description: pyrG Location: 345778-34741 6 bp Feature: gene Location: 347605-348909 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 347608-348211 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 347608-34821 1 bp Feature: domain Description: GIIM Note: maturase Location: 348262-348496 bp Feature: domain Description: GIIM Note: maturase Location: 348262-348496 bp Feature: domain Description: HNH Note: nucleases Location: 348742-348877 bp Feature: domain Description: HNH Note: nucleases Location: 348742-348877 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT KdsA (COG2877), pyrG (PRK05380), RVT-GII, GIIM (pfam08388), HNH (pfam01844)

Seq: AWTP01000002.1 Comamonas thiooxydans strain DF2 contig10, whole genome shotgun sequence (150549 bp)
Overview 1 RT 1: 147501-150478 bp Neighborhood of RT #1 [147501, 150549] LPS_export_lptB LptA RVT-GII GIIM HNH Feature: gene Location: 147501-148283 bp Feature: domain Description: LPS_export_lptB Location: 147555-148281 bp Feature: domain Description: LPS_export_lptB Location: 147555-1482 81 bp Feature: gene Location: 148280-148936 bp Feature: domain Description: LptA Location: 148286-148859 bp Feature: domain Description: LptA Location: 1482 86-148859 bp Feature: gene Location: 149059-150549 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 149164-149812 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 149164-149812 bp Feature: domain Description: GIIM Note: maturase Location: 149866-150097 bp Feature: domain Description: GIIM Note: maturase Location: 149866-150097 bp Feature: domain Description: HNH Note: nucleases Location: 150343-150478 bp Feature: domain Description: HNH Note: nucleases Location: 150343-150478 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT LPS_export_lptB (TIGR04406), LptA (COG1934), RVT-GII, GIIM (pfam08388), HNH (pfam01844)

Seq: AWTP01000046.1 Comamonas thiooxydans strain DF2 contig14, whole genome shotgun sequence (120837 bp)
Overview 1 RT 1: 34302-41808 bp Neighborhood of RT #1 [34302, 41810] PRK10700 ScpB RVT_N RVT-GII GIIM HNHc RluA nlpD nlpD Feature: gene Location: 34302-35891 bp Feature: domain Description: PRK10700 Location: 34788-35514 bp Feature: domain Description: PRK10700 Location: 3 4788-3 5514 bp Feature: gene Location: 35888-37021 bp Feature: domain Description: ScpB Location: 35891-36374 bp Feature: domain Description: ScpB Location: 3 5891-3 63 74 bp Feature: gene Location: 37305-39008 bp Feature: RT Description: RVT_N Location: 37362-37602 bp Feature: RT Description: RVT_N Location: 3 73 62-3 7602 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 37653-38301 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3 7653 -3 83 01 bp Feature: domain Description: GIIM Note: maturase Location: 38352-38586 bp Feature: domain Description: GIIM Note: maturase Location: 3 83 52-3 8586 bp Feature: domain Description: HNHc Note: nucleases Location: 38814-38964 bp Feature: domain Description: HNHc Note: nucleases Location: 3 8814-3 8964 bp Feature: gene Location: 40003-41079 bp Feature: domain Description: RluA Location: 40138-41002 bp Feature: domain Description: RluA Location: 4013 8-41002 bp Feature: gene Location: 41082-41810 bp Feature: domain Description: nlpD Location: 41133-41265 bp Feature: domain Description: nlpD Location: 4113 3 -41265 bp Feature: domain Description: nlpD Location: 41343-41808 bp Feature: domain Description: nlpD Location: 413 43 -41808 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK10700 (23S rRNA pseudouridine(2605) synthase RluB), ScpB (COG1386), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507), RluA (COG0564), nlpD (PRK10871)

Seq: AWTP01000129.1 Comamonas thiooxydans strain DF2 contig46, whole genome shotgun sequence (43137 bp)
Overview 1 RT 1: 26963-33580 bp Neighborhood of RT #1 [26963, 33580] Spr PRK10867 RVT_N RVT-GII GIIM HNHc YpjD Feature: gene Location: 26963-27541 bp Feature: domain Description: Spr Location: 27116-27527 bp Feature: domain Description: Spr Location: 27116-27527 bp Feature: gene Location: 27853-29241 bp Feature: domain Description: PRK10867 Location: 27856-29185 bp Feature: domain Description: PRK10867 Location: 27856-29185 bp Feature: gene Location: 30697-32409 bp Feature: RT Description: RVT_N Location: 30748-30991 bp Feature: RT Description: RVT_N Location: 3074 8-30991 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 31036-31684 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 31036-31684 bp Feature: domain Description: GIIM Note: maturase Location: 31735-31969 bp Feature: domain Description: GIIM Note: maturase Location: 31735-31969 bp Feature: domain Description: HNHc Note: nucleases Location: 32173-32350 bp Feature: domain Description: HNHc Note: nucleases Location: 32173-32350 bp Feature: gene Location: 32520-33338 bp Feature: domain Description: YpjD Location: 32583-33327 bp Feature: domain Description: YpjD Location: 32583-33327 bp Feature: gene Location: 33335-33580 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Spr (COG0791), PRK10867 (signal recognition particle protein; Provisional), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507), YpjD (COG4137)