myRT

myRT report for GCA_000761475.1_ASM76147v1

Download annotations/find similar RTs

Seq: JQNW01000001.1 Chromohalobacter israelensis strain 6768 Scaffold1_1, whole genome shotgun sequence (1037689 bp)
Overview 1 RT 1: 49408-54791 bp 2 RT 2: 249519-255695 bp 3 RT 3: 485978-490738 bp Neighborhood of RT #1 [49408, 54808] PRK06116 RVT-GII GIIM ectoine_EctA ectoine_ectB Neighborhood of RT #2 [249519, 255706] PRK09372 GPDPase_memb GDPD_memb_like RVT-GII GIIM Alanine_zipper PRK06520 Neighborhood of RT #3 [485978, 490743] SlyB DUF2219 RVT-GII GIIM SlpA Feature: gene Location: 49408-49542 bp Feature: gene Location: 49410-50774 bp Feature: domain Description: PRK06116 Location: 49419-50757 bp Feature: domain Description: PRK061 1 6 Location: 4941 9-50757 bp Feature: gene Location: 51294-52682 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 51618-52236 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 51 61 8-52236 bp Feature: domain Description: GIIM Note: maturase Location: 52287-52503 bp Feature: domain Description: GIIM Note: maturase Location: 52287-52503 bp Feature: gene Location: 52931-53515 bp Feature: domain Description: ectoine_EctA Location: 53036-53501 bp Feature: domain Description: ectoine_EctA Location: 53036-53501 bp Feature: gene Location: 53537-54808 bp Feature: domain Description: ectoine_ectB Location: 53549-54791 bp Feature: domain Description: ectoine_ectB Location: 53549-54791 bp Feature: gene Location: 249519-250010 bp Feature: domain Description: PRK09372 Location: 249531-249996 bp Feature: domain Description: PRK09372 Location: 249531 -249996 bp Feature: gene Location: 250083-251897 bp Feature: domain Description: GPDPase_memb Location: 250122-250971 bp Feature: domain Description: GPDPase_memb Location: 2501 22-250971 bp Feature: domain Description: GDPD_memb_like Location: 251139-251808 bp Feature: domain Description: GDPD_memb_like Location: 251 1 39-251 808 bp Feature: gene Location: 251995-253371 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 252319-252937 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 25231 9-252937 bp Feature: domain Description: GIIM Note: maturase Location: 252988-253204 bp Feature: domain Description: GIIM Note: maturase Location: 252988-253204 bp Feature: gene Location: 253910-254173 bp Feature: domain Description: Alanine_zipper Location: 253991-254171 bp Feature: domain Description: Alanine_zipper Location: 253991 -2541 71 bp Feature: gene Location: 254591-255706 bp Feature: domain Description: PRK06520 Location: 254594-255695 bp Feature: domain Description: PRK06520 Location: 254594-255695 bp Feature: gene Location: 485978-486445 bp Feature: domain Description: SlyB Location: 485999-486437 bp Feature: domain Description: SlyB Location: 485999-486437 bp Feature: gene Location: 486594-487595 bp Feature: domain Description: DUF2219 Location: 486705-487587 bp Feature: domain Description: DUF221 9 Location: 486705-487587 bp Feature: gene Location: 487714-489102 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 488038-488656 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 488038-488656 bp Feature: domain Description: GIIM Note: maturase Location: 488707-488923 bp Feature: domain Description: GIIM Note: maturase Location: 488707-488923 bp Feature: gene Location: 489621-490067 bp Feature: gene Location: 490258-490743 bp Feature: domain Description: SlpA Location: 490261-490738 bp Feature: domain Description: SlpA Location: 490261 -490738 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK06116 (glutathione reductase; Validated), RVT-GII, GIIM (pfam08388), ectoine_EctA (TIGR02406), ectoine_ectB (TIGR02407), PRK09372 (ribonuclease E inhibitor RraA), GPDPase_memb (pfam10110), GDPD_memb_like (cd08579), Alanine_zipper (pfam11839), PRK06520 (5-methyltetrahydropteroyltriglutamate--homocysteine S-methyltransferase)
SlyB (COG3133), DUF2219 (pfam09982), SlpA (COG1047)

Seq: JQNW01000002.1 Chromohalobacter israelensis strain 6768 Scaffold2_1, whole genome shotgun sequence (326750 bp)
Overview 1 RT 1: 304869-311056 bp Neighborhood of RT #1 [304869, 311056] PRK05339 PRK06464 RVT-GII GIIM Feature: gene Location: 304869-305702 bp Feature: domain Description: PRK05339 Location: 304875-305688 bp Feature: domain Description: PRK05339 Location: 304875-305688 bp Feature: gene Location: 305982-308372 bp Feature: domain Description: PRK06464 Location: 305988-308358 bp Feature: domain Description: PRK06464 Location: 305988-308358 bp Feature: gene Location: 308908-310314 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 309232-309868 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3092 32 -309868 bp Feature: domain Description: GIIM Note: maturase Location: 309919-310135 bp Feature: domain Description: GIIM Note: maturase Location: 309919-310135 bp Feature: gene Location: 310424-310669 bp Feature: gene Location: 310802-311056 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK05339 (pyruvate, phosphate dikinase/phosphoenolpyruvate synthase regulator), PRK06464 (phosphoenolpyruvate synthase; Validated), RVT-GII, GIIM (pfam08388)

Seq: JQNW01000004.1 Chromohalobacter israelensis strain 6768 Scaffold3_1, whole genome shotgun sequence (579488 bp)
Overview 1 RT 1: 66783-72399 bp 2 RT 2: 464556-471858 bp Neighborhood of RT #1 [66783, 72428] FtsX PRK06596 RVT-GII GIIM slmA PRK00942 Neighborhood of RT #2 [464556, 471860] PBP2_TAXI_TRAP_like_3 COG4666 RVT-GII GIIM YcbX COG3915 Feature: gene Location: 66783-67775 bp Feature: domain Description: FtsX Location: 66879-67770 bp Feature: domain Description: FtsX Location: 66879-67770 bp Feature: gene Location: 67919-68785 bp Feature: domain Description: PRK06596 Location: 67949-68768 bp Feature: domain Description: PRK06596 Location: 67949-68768 bp Feature: gene Location: 69305-70693 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 69629-70247 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 69629-70247 bp Feature: domain Description: GIIM Note: maturase Location: 70298-70514 bp Feature: domain Description: GIIM Note: maturase Location: 70298-70514 bp Feature: gene Location: 70772-71389 bp Feature: domain Description: slmA Location: 70781-71348 bp Feature: domain Description: slmA Location: 70781-713 48 bp Feature: gene Location: 71493-72428 bp Feature: domain Description: PRK00942 Location: 71544-72399 bp Feature: domain Description: PRK00942 Location: 71544-723 99 bp Feature: gene Location: 464556-465533 bp Feature: domain Description: PBP2_TAXI_TRAP_like_3 Location: 464655-465513 bp Feature: domain Description: PBP2_TAXI_TRAP_like_3 Location: 464655-465513 bp Feature: gene Location: 465692-468289 bp Feature: domain Description: COG4666 Location: 465752-467873 bp Feature: domain Description: COG4666 Location: 465752-467873 bp Feature: gene Location: 468817-470205 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 469141-469759 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 469141-469759 bp Feature: domain Description: GIIM Note: maturase Location: 469810-470026 bp Feature: domain Description: GIIM Note: maturase Location: 469810-470026 bp Feature: gene Location: 470409-471209 bp Feature: domain Description: YcbX Location: 470412-471198 bp Feature: domain Description: YcbX Location: 470412-471198 bp Feature: gene Location: 471372-471860 bp Feature: domain Description: COG3915 Location: 471375-471858 bp Feature: domain Description: COG3 915 Location: 4713 75-471858 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT FtsX (pfam02687), PRK06596 (RNA polymerase factor sigma-32; Reviewed), RVT-GII, GIIM (pfam08388), slmA (PRK09480), PRK00942 (acetylglutamate kinase; Provisional), PBP2_TAXI_TRAP_like_3 (cd13568), COG4666 (TRAP-type uncharacterized transport system, fused permease components ), YcbX (COG3217), COG3915 (Uncharacterized protein )

Seq: JQNW01000005.1 Chromohalobacter israelensis strain 6768 Scaffold4_1, whole genome shotgun sequence (333928 bp)
Overview 1 RT 1: 110611-118079 bp Neighborhood of RT #1 [110611, 118081] glyS RVT-GII GIIM PRK08942 gyrB Feature: gene Location: 110611-112677 bp Feature: domain Description: glyS Location: 110626-112672 bp Feature: domain Description: glyS Location: 110626-112672 bp Feature: gene Location: 113092-113325 bp Feature: gene Location: 113324-114580 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 113516-114134 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 113516-114 134 bp Feature: domain Description: GIIM Note: maturase Location: 114185-114401 bp Feature: domain Description: GIIM Note: maturase Location: 114 185-114 4 01 bp Feature: gene Location: 114979-115536 bp Feature: domain Description: PRK08942 Location: 114997-115525 bp Feature: domain Description: PRK0894 2 Location: 114 997-115525 bp Feature: gene Location: 115664-118081 bp Feature: domain Description: gyrB Location: 115670-118079 bp Feature: domain Description: gyrB Location: 115670-118079 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT glyS (TIGR00211), RVT-GII, GIIM (pfam08388), PRK08942 (D-glycero-beta-D-manno-heptose 1,7-bisphosphate 7-phosphatase), gyrB (TIGR01059)

Seq: JQNW01000006.1 Chromohalobacter israelensis strain 6768 Scaffold4_3, whole genome shotgun sequence (103286 bp)
Overview 1 RT 1: 3-2937 bp Neighborhood of RT #1 [3, 2978] RVT-GII FkpA PBP2_TRAP_UehA_TeaA Feature: gene Location: 3-581 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 327-582 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 327-5 82 bp Feature: gene Location: 1087-1806 bp Feature: domain Description: FkpA Location: 1162-1765 bp Feature: domain Description: FkpA Location: 1162-1765 bp Feature: gene Location: 1953-2978 bp Feature: domain Description: PBP2_TRAP_UehA_TeaA Location: 2031-2937 bp Feature: domain Description: PBP2_TRAP_UehA_TeaA Location: 2031-2937 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT FkpA (COG0545), PBP2_TRAP_UehA_TeaA (cd13668), RVT-GII

Seq: JQNW01000009.1 Chromohalobacter israelensis strain 6768 Scaffold7_1, whole genome shotgun sequence (176217 bp)
Overview 1 RT 1: 2-3466 bp 2 RT 2: 138056-144374 bp Neighborhood of RT #1 [2, 3480] RVT-GII GIIM Mqo SerB Neighborhood of RT #2 [138056, 144382] PRK00772 PRK06598 RVT-GII GIIM PRK15063 ElaA Feature: gene Location: 2-985 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5-539 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5-539 bp Feature: domain Description: GIIM Note: maturase Location: 590-806 bp Feature: domain Description: GIIM Note: maturase Location: 590-806 bp Feature: gene Location: 1105-2631 bp Feature: domain Description: Mqo Location: 1132-2596 bp Feature: domain Description: Mqo Location: 1132-2596 bp Feature: gene Location: 2824-3480 bp Feature: domain Description: SerB Location: 2827-3466 bp Feature: domain Description: SerB Location: 2827-346 6 bp Feature: gene Location: 138056-139195 bp Feature: domain Description: PRK00772 Location: 138119-139187 bp Feature: domain Description: PRK00772 Location: 138119-139187 bp Feature: gene Location: 139285-140367 bp Feature: domain Description: PRK06598 Location: 139288-140359 bp Feature: domain Description: PRK06 598 Location: 139288-140359 bp Feature: gene Location: 140885-142273 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 141209-141827 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 141209-141827 bp Feature: domain Description: GIIM Note: maturase Location: 141878-142094 bp Feature: domain Description: GIIM Note: maturase Location: 141878-142094 bp Feature: gene Location: 142363-143838 bp Feature: domain Description: PRK15063 Location: 142537-143836 bp Feature: domain Description: PRK1506 3 Location: 142537-143836 bp Feature: gene Location: 143960-144382 bp Feature: domain Description: ElaA Location: 144020-144374 bp Feature: domain Description: ElaA Location: 144020-144374 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Mqo (pfam06039), SerB (COG0560), RVT-GII, GIIM (pfam08388), PRK00772 (3-isopropylmalate dehydrogenase; Provisional), PRK06598 (aspartate-semialdehyde dehydrogenase; Reviewed), PRK15063 (isocitrate lyase; Provisional), ElaA (COG2153)