myRT

myRT report for GCA_000763165.1_ASM76316v1

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Seq: JNCT01000111.1 Nocardia seriolae strain ZJ0503 Scaffold110_1, whole genome shotgun sequence (25553 bp)
Overview 1 RT 1: 22224-25485 bp Neighborhood of RT #1 [22224, 25485] DUF4096 DDE_Tnp_1 RVT-GII Intron_maturas2 HNHc Feature: gene Location: 22224-22586 bp Feature: domain Description: DUF4096 Location: 22257-22485 bp Feature: domain Description: DUF4096 Location: 22257-22485 bp Feature: gene Location: 22661-22996 bp Feature: domain Description: DDE_Tnp_1 Location: 22667-22916 bp Feature: domain Description: DDE_Tnp_1 Location: 22667-2291 6 bp Feature: gene Location: 23454-25238 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 23715-24513 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2371 5-2451 3 bp Feature: domain Description: Intron_maturas2 Location: 24630-24843 bp Feature: domain Description: Intron_maturas2 Location: 24630-24843 bp Feature: domain Description: HNHc Note: nucleases Location: 25038-25194 bp Feature: domain Description: HNHc Note: nucleases Location: 25038-251 94 bp Feature: gene Location: 25255-25485 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF4096 (pfam13340), DDE_Tnp_1 (pfam01609), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507)

Seq: JNCT01000159.1 Nocardia seriolae strain ZJ0503 Scaffold158_1, whole genome shotgun sequence (13907 bp)
Overview 1 RT 1: 4107-7258 bp Neighborhood of RT #1 [4107, 7293] YkfC RVT-GII PHA02517 Tra8 Tra8 Tra8 Feature: gene Location: 4107-4346 bp Feature: gene Location: 4623-4991 bp Feature: domain Description: YkfC Location: 4770-4929 bp Feature: domain Description: YkfC Location: 4770-492 9 bp Feature: gene Location: 4988-5548 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5036-5486 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5036-5486 bp Feature: gene Location: 5558-5803 bp Feature: domain Description: PHA02517 Location: 5567-5771 bp Feature: domain Description: PHA02 517 Location: 5567-5771 bp Feature: gene Location: 5980-7293 bp Feature: domain Description: Tra8 Location: 6133-6394 bp Feature: domain Description: Tra8 Location: 6133-6394 bp Feature: domain Description: Tra8 Location: 6493-6859 bp Feature: domain Description: Tra8 Location: 6493-6859 bp Feature: domain Description: Tra8 Location: 6925-7258 bp Feature: domain Description: Tra8 Location: 692 5-72 58 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT YkfC (COG3344), RVT-GII, PHA02517 (putative transposase OrfB; Reviewed), Tra8 (COG2826)

Seq: JNCT01000262.1 Nocardia seriolae strain ZJ0503 Scaffold260_1, whole genome shotgun sequence (2171 bp)
Overview 1 RT 1: 1-2042 bp Neighborhood of RT #1 [1, 2071] DDE_5 RVT-GII Feature: gene Location: 1-1410 bp Feature: domain Description: DDE_5 Location: 67-688 bp Feature: domain Description: DDE_5 Location: 67-688 bp Feature: gene Location: 1430-2071 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1745-2042 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1745-2042 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DDE_5 (pfam13546), RVT-GII

Seq: JNCT01000318.1 Nocardia seriolae strain ZJ0503 Scaffold314_1, whole genome shotgun sequence (518 bp)
Overview 1 RT 1: 2-518 bp Neighborhood of RT #1 [2, 517] RVT-GII Feature: gene Location: 2-517 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 257-518 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 257-518 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII