myRT

myRT report for GCA_000764225.1_ASM76422v1

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Seq: JQED01000042.1 Colwellia psychrerythraea strain ND2E ctg4, whole genome shotgun sequence (194657 bp)
Overview 1 RT 1: 191586-194504 bp Neighborhood of RT #1 [191586, 194545] HTH_XRE RVT-Retrons DUF2787 Porin_O_P Feature: gene Location: 191586-191837 bp Feature: gene Location: 191860-192144 bp Ori: KGJ88972.1 Feature: domain Description: HTH_XRE Location: 191878-192040 bp Feature: domain Description: HTH_XRE Location: 1 91 878-1 92040 bp Feature: gene Location: 192128-193105 bp Ori: KGJ88973.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 192269-192833 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1 92269-1 92833 bp Feature: gene Location: 193256-193630 bp Ori: KGJ88974.1 Feature: domain Description: DUF2787 Location: 193307-193616 bp Feature: domain Description: DUF2787 Location: 1 93307-1 9361 6 bp Feature: gene Location: 194066-194545 bp Ori: KGJ88975.1 Feature: domain Description: Porin_O_P Location: 194258-194504 bp Feature: domain Description: Porin_O_P Location: 1 94258-1 94504 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_XRE (smart00530), RVT-Retrons, DUF2787 (pfam10980), Porin_O_P (pfam07396)

Seq: JQED01000055.1 Colwellia psychrerythraea strain ND2E ctg7, whole genome shotgun sequence (578129 bp)
Overview 1 RT 1: 572447-577850 bp Neighborhood of RT #1 [572447, 577850] RVT-Retrons Feature: gene Location: 572447-574906 bp Feature: gene Location: 575273-576223 bp Feature: gene Location: 576210-577133 bp Ori: KGJ87334.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 576312-576897 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 576312 -576897 bp Feature: gene Location: 577188-577850 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-Retrons

Seq: JQED01000003.1 Colwellia psychrerythraea strain ND2E ctg12, whole genome shotgun sequence (495174 bp)
Overview 1 RT 1: 88-3741 bp Neighborhood of RT #1 [88, 3752] RVT-UG28 Peptidase_M56 TonB COG3682 Feature: gene Location: 88-1545 bp Ori: KGJ95237.1 Feature: RT Description: RVT-UG28 Note: UG28 RT Location: 376-1015 bp Feature: RT Description: RVT-UG28 Note: UG28 RT Location: 3 76-1015 bp Feature: gene Location: 2111-3331 bp Ori: KGJ95238.1 Feature: domain Description: Peptidase_M56 Location: 2138-2870 bp Feature: domain Description: Peptidase_M56 Location: 213 8-2870 bp Feature: domain Description: TonB Location: 3005-3260 bp Feature: domain Description: TonB Location: 3 005-3 260 bp Feature: gene Location: 3324-3752 bp Ori: KGJ95239.1 Feature: domain Description: COG3682 Location: 3381-3741 bp Feature: domain Description: COG3 682 Location: 3 3 81-3 741 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG28, Peptidase_M56 (pfam05569), TonB (COG0810), COG3682 (Predicted transcriptional regulator )