myRT

myRT report for GCA_000764325.1_2540-90v1.0

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Seq: JMCG01000001.1 Vibrio navarrensis strain ATCC 51183 contig1, whole genome shotgun sequence (3244259 bp)
Overview 1 RT 1: 618061-623402 bp 2 RT 2: 1038968-1042528 bp 3 RT 3: 1216931-1226543 bp 4 RT 4: 1795467-1799311 bp 5 RT 5: 1801955-1805117 bp 6 RT 6: 2076328-2083495 bp 7 RT 7: 2629223-2635658 bp 8 RT 8: 3159481-3166757 bp Neighborhood of RT #1 [618061, 623404] TnpB_IS66 RVT-GII DDE_Tnp_1_5 PRK09414 Neighborhood of RT #2 [1038968, 1042539] TnpB_IS66 RVT-GII YccT YccT YbbJ Neighborhood of RT #3 [1216931, 1226548] TnpB_IS66 RVT-GII HigA RVT_N RVT-GII GIIM IstB_IS21_ATP IstB_IS21 sigma70-ECF COG4584 COG4584 Neighborhood of RT #4 [1795467, 1799322] TnpB_IS66 RVT-GII DDE_Tnp_1_6 DUF4144 Neighborhood of RT #5 [1801955, 1805161] YiaG RelE RVT-GII TnpB_IS66 Neighborhood of RT #6 [2076328, 2083495] TnpB_IS66 RVT-GII COG5421 Neighborhood of RT #7 [2629223, 2636146] COG3169 nifL_nitrog Tar RVT-GII GIIM EEP ChiC_BD ChiC_BD Neighborhood of RT #8 [3159481, 3166903] LZ_Tnp_IS66 zf-IS66 DDE_Tnp_IS66 DDE_Tnp_IS66_C RVT-GII HTH_Tnp_1 HTH_Tnp_1 Tra5 Feature: gene Location: 618061-618414 bp Feature: domain Description: TnpB_IS66 Location: 618088-618370 bp Feature: domain Description: TnpB_IS66 Location: 61 8088-61 8370 bp Feature: gene Location: 618411-618731 bp Feature: gene Location: 619208-620695 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 619577-620270 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 61 9577-620270 bp Feature: gene Location: 620910-621818 bp Feature: domain Description: DDE_Tnp_1_5 Location: 620970-621300 bp Feature: domain Description: DDE_Tnp_1 _5 Location: 620970-621 300 bp Feature: gene Location: 622052-623404 bp Feature: domain Description: PRK09414 Location: 622061-623402 bp Feature: domain Description: PRK0941 4 Location: 622061 -623402 bp Feature: gene Location: 1038968-1039321 bp Feature: domain Description: TnpB_IS66 Location: 1038995-1039277 bp Feature: domain Description: TnpB_IS66 Location: 1 038995-1 039277 bp Feature: gene Location: 1039318-1039638 bp Feature: gene Location: 1040115-1041602 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1040484-1041177 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 040484-1 041 1 77 bp Feature: gene Location: 1041675-1042043 bp Feature: domain Description: YccT Location: 1041822-1041912 bp Feature: domain Description: YccT Location: 1 041 822-1 041 91 2 bp Feature: domain Description: YccT Location: 1041939-1042041 bp Feature: domain Description: YccT Location: 1 041 939-1 042041 bp Feature: gene Location: 1042087-1042539 bp Feature: domain Description: YbbJ Location: 1042111-1042528 bp Feature: domain Description: YbbJ Location: 1 0421 1 1 -1 042528 bp Feature: gene Location: 1216931-1217284 bp Feature: domain Description: TnpB_IS66 Location: 1216958-1217240 bp Feature: domain Description: TnpB_IS66 Location: 1 21 6958-1 21 7240 bp Feature: gene Location: 1217281-1217601 bp Feature: gene Location: 1218078-1219565 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1218447-1219140 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 21 8447-1 21 91 40 bp Feature: gene Location: 1219635-1220021 bp Feature: gene Location: 1220395-1220661 bp Feature: domain Description: HigA Location: 1220524-1220659 bp Feature: domain Description: HigA Location: 1 220524-1 220659 bp Feature: gene Location: 1221269-1222741 bp Feature: RT Description: RVT_N Location: 1221317-1221560 bp Feature: RT Description: RVT_N Location: 1 221 31 7-1 221 560 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1221605-1222232 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 221 605-1 222232 bp Feature: domain Description: GIIM Note: maturase Location: 1222289-1222517 bp Feature: domain Description: GIIM Note: maturase Location: 1 222289-1 22251 7 bp Feature: gene Location: 1224265-1225005 bp Feature: domain Description: IstB_IS21_ATP Location: 1224334-1224415 bp Feature: domain Description: IstB_IS21 _ATP Location: 1 224334-1 22441 5 bp Feature: domain Description: IstB_IS21 Location: 1224427-1224952 bp Feature: domain Description: IstB_IS21 Location: 1 224427-1 224952 bp Feature: gene Location: 1225016-1226548 bp Feature: domain Description: sigma70-ECF Location: 1225052-1225157 bp Feature: domain Description: sigma70-ECF Location: 1 225052-1 2251 57 bp Feature: domain Description: COG4584 Location: 1225163-1225910 bp Feature: domain Description: COG4584 Location: 1 2251 63-1 22591 0 bp Feature: domain Description: COG4584 Location: 1226003-1226543 bp Feature: domain Description: COG4584 Location: 1 226003-1 226543 bp Feature: gene Location: 1795467-1795820 bp Feature: domain Description: TnpB_IS66 Location: 1795494-1795776 bp Feature: domain Description: TnpB_IS66 Location: 1 795494-1 795776 bp Feature: gene Location: 1795817-1796137 bp Feature: gene Location: 1796614-1798101 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1796983-1797676 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 796983-1 797676 bp Feature: gene Location: 1798105-1798731 bp Feature: domain Description: DDE_Tnp_1_6 Location: 1798381-1798705 bp Feature: domain Description: DDE_Tnp_1 _6 Location: 1 798381 -1 798705 bp Feature: gene Location: 1799008-1799322 bp Feature: domain Description: DUF4144 Location: 1799020-1799311 bp Feature: domain Description: DUF41 44 Location: 1 799020-1 79931 1 bp Feature: gene Location: 1801955-1802269 bp Feature: domain Description: YiaG Location: 1801961-1802252 bp Feature: domain Description: YiaG Location: 1 801 961 -1 802252 bp Feature: gene Location: 1802256-1802495 bp Feature: domain Description: RelE Location: 1802298-1802466 bp Feature: domain Description: RelE Location: 1 802298-1 802466 bp Feature: gene Location: 1802527-1804014 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1802896-1803589 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 802896-1 803589 bp Feature: gene Location: 1804491-1804811 bp Feature: gene Location: 1804808-1805161 bp Feature: domain Description: TnpB_IS66 Location: 1804835-1805117 bp Feature: domain Description: TnpB_IS66 Location: 1 804835-1 8051 1 7 bp Feature: gene Location: 2076328-2076681 bp Feature: domain Description: TnpB_IS66 Location: 2076355-2076637 bp Feature: domain Description: TnpB_IS66 Location: 2076355-2076637 bp Feature: gene Location: 2076678-2076998 bp Feature: gene Location: 2077475-2078962 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2077844-2078537 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2077844-2078537 bp Feature: gene Location: 2079097-2080707 bp Feature: domain Description: COG5421 Location: 2079124-2080609 bp Feature: domain Description: COG5421 Location: 20791 24-2080609 bp Feature: gene Location: 2082704-2083495 bp Feature: gene Location: 2629223-2629573 bp Feature: domain Description: COG3169 Location: 2629226-2629562 bp Feature: domain Description: COG31 69 Location: 2629226-2629562 bp Feature: gene Location: 2629794-2631329 bp Feature: domain Description: nifL_nitrog Location: 2629857-2630109 bp Feature: domain Description: nifL_nitrog Location: 2629857-26301 09 bp Feature: domain Description: Tar Location: 2630481-2631309 bp Feature: domain Description: Tar Location: 2630481 -2631 309 bp Feature: gene Location: 2631597-2632901 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2631885-2632527 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2631 885-2632527 bp Feature: domain Description: GIIM Note: maturase Location: 2632599-2632806 bp Feature: domain Description: GIIM Note: maturase Location: 2632599-2632806 bp Feature: gene Location: 2633983-2635308 bp Feature: domain Description: EEP Location: 2634088-2634979 bp Feature: domain Description: EEP Location: 2634088-2634979 bp Feature: gene Location: 2635322-2636146 bp Feature: domain Description: ChiC_BD Location: 2635391-2635514 bp Feature: domain Description: ChiC_BD Location: 2635391 -263551 4 bp Feature: domain Description: ChiC_BD Location: 2635550-2635658 bp Feature: domain Description: ChiC_BD Location: 2635550-2635658 bp Feature: gene Location: 3159481-3161013 bp Feature: domain Description: LZ_Tnp_IS66 Location: 3159595-3159805 bp Feature: domain Description: LZ_Tnp_IS66 Location: 31 59595-31 59805 bp Feature: domain Description: zf-IS66 Location: 3159829-3159961 bp Feature: domain Description: zf-IS66 Location: 31 59829-31 59961 bp Feature: domain Description: DDE_Tnp_IS66 Location: 3160021-3160873 bp Feature: domain Description: DDE_Tnp_IS66 Location: 31 60021 -31 60873 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 3160891-3160999 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 31 60891 -31 60999 bp Feature: gene Location: 3161661-3161981 bp Feature: gene Location: 3162458-3163945 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3162827-3163520 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 31 62827-31 63520 bp Feature: gene Location: 3165369-3165869 bp Feature: domain Description: HTH_Tnp_1 Location: 3165384-3165534 bp Feature: domain Description: HTH_Tnp_1 Location: 31 65384-31 65534 bp Feature: domain Description: HTH_Tnp_1 Location: 3165552-3165774 bp Feature: domain Description: HTH_Tnp_1 Location: 31 65552-31 65774 bp Feature: gene Location: 3165896-3166903 bp Feature: domain Description: Tra5 Location: 3166016-3166757 bp Feature: domain Description: Tra5 Location: 31 6601 6-31 66757 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT TnpB_IS66 (pfam05717), RVT-GII, DDE_Tnp_1_5 (pfam13737), PRK09414 (NADP-specific glutamate dehydrogenase), YccT (COG3110), YbbJ (COG1585), HigA (COG5499), RVT_N (pfam13655), GIIM (pfam08388), IstB_IS21_ATP (pfam08483)
IstB_IS21 (pfam01695), sigma70-ECF (TIGR02937), COG4584 (Transposase ), DDE_Tnp_1_6 (pfam13751), DUF4144 (pfam13642), YiaG (COG2944), RelE (pfam06296), COG5421 (Transposase ), COG3169 (Uncharacterized conserved protein, DUF486 family ), nifL_nitrog (TIGR02938)
Tar (COG0840), EEP (cl00490), ChiC_BD (cd12215), LZ_Tnp_IS66 (pfam13007), zf-IS66 (pfam13005), DDE_Tnp_IS66 (pfam03050), DDE_Tnp_IS66_C (pfam13817), HTH_Tnp_1 (pfam01527), Tra5 (COG2801)