myRT

myRT report for GCA_000764345.1_0053-83v1.0

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Seq: JMCF01000041.1 Vibrio navarrensis strain 0053-83 contig41, whole genome shotgun sequence (1522 bp)
Overview 1 RT 1: 70-1174 bp Neighborhood of RT #1 [70, 1353] RVT-GII GIIM Feature: gene Location: 70-1353 bp Ori: KGK15177.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 283-904 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 283-904 bp Feature: domain Description: GIIM Note: maturase Location: 949-1174 bp Feature: domain Description: GIIM Note: maturase Location: 949-1 1 74 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: JMCF01000055.1 Vibrio navarrensis strain 0053-83 contig55, whole genome shotgun sequence (222349 bp)
Overview 1 RT 1: 189300-193281 bp Neighborhood of RT #1 [189300, 193281] PRK15285 FimA RVT-UG4 SCPU Feature: gene Location: 189300-190043 bp Ori: KGK15024.1 Feature: domain Description: PRK15285 Location: 189327-190029 bp Feature: domain Description: PRK152 85 Location: 18932 7-19002 9 bp Feature: gene Location: 190189-190629 bp Ori: KGK15025.1 Feature: domain Description: FimA Location: 190195-190627 bp Feature: domain Description: FimA Location: 190195-19062 7 bp Feature: gene Location: 190805-191581 bp Ori: KGK15026.1 Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 190976-191414 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 190976-191414 bp Feature: gene Location: 191578-192402 bp Ori: KGK15027.1 Feature: domain Description: SCPU Location: 192100-192244 bp Feature: domain Description: SCPU Location: 192 100-192 2 44 bp Feature: gene Location: 193045-193281 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK15285 (fimbrial chaperone StfD), FimA (pfam16970), RVT-UG4, SCPU (smart00972)