myRT

myRT report for GCA_000764835.1_ASM76483v1

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Seq: BBNU01000046.1 Algibacter lectus DNA, contig: contig00046, strain: JCM 19274, whole genome shotgun sequence (5206 bp)
Overview 1 RT 1: 2464-4435 bp Neighborhood of RT #1 [2464, 4509] CC3_like_SDR_a GIIM RVT-GII Feature: gene Location: 2464-3132 bp Feature: domain Description: CC3_like_SDR_a Location: 2470-3097 bp Feature: domain Description: CC3_like_SDR_a Location: 2470-3097 bp Feature: gene Location: 3227-3580 bp Feature: domain Description: GIIM Note: maturase Location: 3233-3395 bp Feature: domain Description: GIIM Note: maturase Location: 3233-3395 bp Feature: gene Location: 3799-4509 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3994-4435 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3994-4435 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT CC3_like_SDR_a (cd05250), GIIM (pfam08388), RVT-GII

Seq: BBNU01000016.1 Algibacter lectus DNA, contig: contig00016, strain: JCM 19274, whole genome shotgun sequence (115223 bp)
Overview 1 RT 1: 105764-111154 bp Neighborhood of RT #1 [105764, 111180] NrdG TPR_12 TPR_12 TPR_12 COG4585 RVT-Retrons SWIM Feature: gene Location: 105764-106393 bp Feature: domain Description: NrdG Location: 105809-106388 bp Feature: domain Description: NrdG Location: 105809-106388 bp Feature: gene Location: 106614-108494 bp Feature: domain Description: TPR_12 Location: 106779-106926 bp Feature: domain Description: TPR_12 Location: 106779-10692 6 bp Feature: domain Description: TPR_12 Location: 106983-107184 bp Feature: domain Description: TPR_12 Location: 106983-107184 bp Feature: domain Description: TPR_12 Location: 107334-107547 bp Feature: domain Description: TPR_12 Location: 107334-107547 bp Feature: domain Description: COG4585 Location: 107808-108489 bp Feature: domain Description: COG4585 Location: 107808-108489 bp Feature: gene Location: 108713-109618 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 108719-109265 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 108719-1092 65 bp Feature: gene Location: 109612-110235 bp Feature: gene Location: 110497-111180 bp Feature: domain Description: SWIM Location: 111052-111154 bp Feature: domain Description: SWIM Location: 111052 -111154 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT NrdG (TIGR02491), TPR_12 (pfam13424), COG4585 (Signal transduction histidine kinase ), RVT-Retrons, SWIM (pfam04434)