myRT

myRT report for GCA_000765135.1_ASM76513v1

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Seq: JPJD01000020.1 Intestinimonas butyriciproducens strain ER1 contig_20, whole genome shotgun sequence (182853 bp)
Overview 1 RT 1: 29553-33784 bp Neighborhood of RT #1 [29553, 33784] ChiA1_BD ChiA1_BD CADG CADG RVT-DGRs Avd_like Feature: gene Location: 29553-30116 bp Feature: domain Description: ChiA1_BD Location: 29778-29910 bp Feature: domain Description: ChiA1 _BD Location: 29778-2991 0 bp Feature: domain Description: ChiA1_BD Location: 29988-30087 bp Feature: domain Description: ChiA1 _BD Location: 29988-30087 bp Feature: gene Location: 30113-31849 bp Feature: domain Description: CADG Location: 31022-31217 bp Feature: domain Description: CADG Location: 31 022-31 21 7 bp Feature: domain Description: CADG Location: 31328-31535 bp Feature: domain Description: CADG Location: 31 328-31 535 bp Feature: gene Location: 31834-32889 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 32032-32635 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 32032-32635 bp Feature: gene Location: 33181-33426 bp Feature: domain Description: Avd_like Location: 33184-33409 bp Feature: domain Description: Avd_like Location: 331 84-33409 bp Feature: gene Location: 33500-33784 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT ChiA1_BD (cd12214), CADG (smart00736), RVT-DGRs, Avd_like (cd16376)

Seq: JPJD01000028.1 Intestinimonas butyriciproducens strain ER1 contig_28, whole genome shotgun sequence (111561 bp)
Overview 1 RT 1: 68663-71876 bp Neighborhood of RT #1 [68663, 71887] GtrA RVT-UG2 HTH_16 RpoE Feature: gene Location: 68663-69064 bp Feature: domain Description: GtrA Location: 68681-69056 bp Feature: domain Description: GtrA Location: 68681-69056 bp Feature: gene Location: 69068-69205 bp Feature: gene Location: 69311-70501 bp Feature: RT Description: RVT-UG2 Note: UG2 RT Location: 69401-70211 bp Feature: RT Description: RVT-UG2 Note: UG2 RT Location: 69401-702 11 bp Feature: gene Location: 71221-71418 bp Feature: domain Description: HTH_16 Location: 71227-71404 bp Feature: domain Description: HTH_16 Location: 712 2 7-71404 bp Feature: gene Location: 71459-71887 bp Feature: domain Description: RpoE Location: 71483-71876 bp Feature: domain Description: RpoE Location: 71483-71876 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT GtrA (pfam04138), RVT-UG2, HTH_16 (pfam12645), RpoE (COG3343)

Seq: JPJD01000031.1 Intestinimonas butyriciproducens strain ER1 contig_31, whole genome shotgun sequence (58373 bp)
Overview 1 RT 1: 44371-49570 bp Neighborhood of RT #1 [44371, 49570] PrgI VirB4_CagE VirB4_CagE RVT-GII Intron_maturas2 Feature: gene Location: 44371-44730 bp Feature: domain Description: PrgI Location: 44392-44662 bp Feature: domain Description: PrgI Location: 443 92-44662 bp Feature: gene Location: 44723-46714 bp Feature: domain Description: VirB4_CagE Location: 44783-45239 bp Feature: domain Description: VirB4_CagE Location: 44783 -4523 9 bp Feature: domain Description: VirB4_CagE Location: 45404-46688 bp Feature: domain Description: VirB4_CagE Location: 45404-46688 bp Feature: gene Location: 47281-49092 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 47545-48379 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 47545-483 79 bp Feature: domain Description: Intron_maturas2 Location: 48448-48757 bp Feature: domain Description: Intron_maturas2 Location: 48448-48757 bp Feature: gene Location: 49193-49321 bp Feature: gene Location: 49334-49570 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PrgI (pfam12666), VirB4_CagE (TIGR00929), RVT-GII, Intron_maturas2 (pfam01348)

Seq: JPJD01000048.1 Intestinimonas butyriciproducens strain ER1 contig_48, whole genome shotgun sequence (35231 bp)
Overview 1 RT 1: 22151-26897 bp Neighborhood of RT #1 [22151, 26947] ParB_N_like RVT-UG15 HTH_Tnp_1 PHA02517 Fer4_9 Feature: gene Location: 22151-22534 bp Feature: gene Location: 22636-24009 bp Feature: domain Description: ParB_N_like Location: 23173-23428 bp Feature: domain Description: ParB_N_like Location: 23173-234 28 bp Feature: gene Location: 24172-24990 bp Feature: RT Description: RVT-UG15 Note: UG15 RT Location: 24415-24811 bp Feature: RT Description: RVT-UG15 Note: UG15 RT Location: 24 4 15-24 811 bp Feature: gene Location: 25296-26432 bp Feature: domain Description: HTH_Tnp_1 Location: 25302-25503 bp Feature: domain Description: HTH_Tnp_1 Location: 25302-25503 bp Feature: domain Description: PHA02517 Location: 25626-26418 bp Feature: domain Description: PHA02517 Location: 25626-264 18 bp Feature: gene Location: 26660-26947 bp Feature: domain Description: Fer4_9 Location: 26711-26897 bp Feature: domain Description: Fer4 _9 Location: 26711-26897 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT ParB_N_like (cd16411), RVT-UG15, HTH_Tnp_1 (pfam01527), PHA02517 (putative transposase OrfB; Reviewed), Fer4_9 (pfam13187)