myRT

myRT report for GCA_000768595.1_DC5_1.0

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Seq: JDRY01000123.1 Clostridium botulinum C/D str. DC5 Contig123, whole genome shotgun sequence (2051 bp)
Overview 1 RT 1: 475-1723 bp Neighborhood of RT #1 [475, 1896] RVT-GII GIIM Feature: gene Location: 475-1896 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 832-1450 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 832-1 450 bp Feature: domain Description: GIIM Note: maturase Location: 1504-1723 bp Feature: domain Description: GIIM Note: maturase Location: 1 504-1 723 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: JDRY01000034.1 Clostridium botulinum C/D str. DC5 Contig34, whole genome shotgun sequence (108749 bp)
Overview 1 RT 1: 1-3551 bp Neighborhood of RT #1 [1, 3556] RVT-GII HDGYP HDGYP Feature: gene Location: 1-576 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 358-577 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 358-577 bp Feature: gene Location: 1174-2061 bp Feature: gene Location: 2321-3556 bp Feature: domain Description: HDGYP Location: 2399-2792 bp Feature: domain Description: HDGYP Location: 2 399-2 792 bp Feature: domain Description: HDGYP Location: 2990-3551 bp Feature: domain Description: HDGYP Location: 2 990-3551 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, HDGYP (COG2206)

Seq: JDRY01000168.1 Clostridium botulinum C/D str. DC5 p1CbDC5_4, whole genome shotgun sequence (28427 bp)
Overview 1 RT 1: 8112-12593 bp Neighborhood of RT #1 [8112, 12593] RVT-GII HNHc Feature: gene Location: 8112-8462 bp Feature: gene Location: 8717-9283 bp Feature: gene Location: 10031-11926 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 10331-11066 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 103 3 1-11066 bp Feature: domain Description: HNHc Note: nucleases Location: 11660-11789 bp Feature: domain Description: HNHc Note: nucleases Location: 11660-11789 bp Feature: gene Location: 12010-12243 bp Feature: gene Location: 12249-12593 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, HNHc (smart00507)

Seq: JDRY01000119.1 Clostridium botulinum C/D str. DC5 Contig119, whole genome shotgun sequence (1901 bp)
Overview 1 RT 1: 1-1249 bp Neighborhood of RT #1 [1, 1361] RVT-GII GIIM Feature: gene Location: 1-1361 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 358-976 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 358-976 bp Feature: domain Description: GIIM Note: maturase Location: 1030-1249 bp Feature: domain Description: GIIM Note: maturase Location: 1030-124 9 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: JDRY01000174.1 Clostridium botulinum C/D str. DC5 p2CbDC5_4, whole genome shotgun sequence (39127 bp)
Overview 1 RT 1: 1-2616 bp Neighborhood of RT #1 [1, 2616] RVT-GII GIIM WG_beta_rep WG_beta_rep Feature: gene Location: 1-1249 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 358-976 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 35 8-976 bp Feature: domain Description: GIIM Note: maturase Location: 1030-1240 bp Feature: domain Description: GIIM Note: maturase Location: 1030-1240 bp Feature: gene Location: 1767-1985 bp Feature: domain Description: WG_beta_rep Location: 1770-1863 bp Feature: domain Description: WG_beta_rep Location: 1770-1863 bp Feature: domain Description: WG_beta_rep Location: 1863-1917 bp Feature: domain Description: WG_beta_rep Location: 1863-1917 bp Feature: gene Location: 2365-2616 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), WG_beta_rep (pfam14903)

Seq: JDRY01000173.1 Clostridium botulinum C/D str. DC5 p2CbDC5_3, whole genome shotgun sequence (18577 bp)
Overview 1 RT 1: 7939-13615 bp Neighborhood of RT #1 [7939, 13749] XRE RVT-GII HNHc DUF3887 YhfC Feature: gene Location: 7939-8151 bp Feature: domain Description: XRE Location: 7960-8146 bp Feature: domain Description: XRE Location: 796 0-8146 bp Feature: gene Location: 8148-8465 bp Feature: gene Location: 8879-10714 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9197-9917 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9197-9917 bp Feature: domain Description: HNHc Note: nucleases Location: 10499-10592 bp Feature: domain Description: HNHc Note: nucleases Location: 10499-10592 bp Feature: gene Location: 12585-12980 bp Feature: domain Description: DUF3887 Location: 12705-12969 bp Feature: domain Description: DUF3887 Location: 12705-1296 9 bp Feature: gene Location: 12958-13749 bp Feature: domain Description: YhfC Location: 13048-13615 bp Feature: domain Description: YhfC Location: 13048-136 15 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF3887 (pfam13026), YhfC (COG4377), XRE (COG1476), RVT-GII, HNHc (smart00507)

Seq: JDRY01000155.1 Clostridium botulinum C/D str. DC5 Contig155, whole genome shotgun sequence (1080 bp)
Overview 1 RT 1: 343-1081 bp Neighborhood of RT #1 [343, 1080] RVT-GII Feature: gene Location: 343-1080 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 700-1081 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7 00-1081 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII

Seq: JDRY01000170.1 Clostridium botulinum C/D str. DC5 p1CbDC5_6, whole genome shotgun sequence (120974 bp)
Overview 1 RT 1: 19715-27121 bp Neighborhood of RT #1 [19715, 27135] XerD RVT-GII GIIM FlgJ SH3_3 Feature: gene Location: 19715-19933 bp Feature: gene Location: 20017-20835 bp Feature: domain Description: XerD Location: 20026-20830 bp Feature: domain Description: XerD Location: 20026-208 30 bp Feature: gene Location: 21703-23124 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 22060-22678 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 22060-22678 bp Feature: domain Description: GIIM Note: maturase Location: 22732-22951 bp Feature: domain Description: GIIM Note: maturase Location: 22732-22951 bp Feature: gene Location: 23225-24775 bp Feature: gene Location: 26416-27135 bp Feature: domain Description: FlgJ Location: 26422-26911 bp Feature: domain Description: FlgJ Location: 26422-26911 bp Feature: domain Description: SH3_3 Location: 26971-27121 bp Feature: domain Description: SH3_3 Location: 26971-27121 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT XerD (COG4974), RVT-GII, GIIM (pfam08388), FlgJ (COG1705), SH3_3 (pfam08239)

Seq: JDRY01000008.1 Clostridium botulinum C/D str. DC5 Contig8, whole genome shotgun sequence (126740 bp)
Overview 1 RT 1: 1-1981 bp Neighborhood of RT #1 [1, 2214] RVT-GII GIIM iSH2_PIK3R1 FlgJ MurNAc-LAA Feature: gene Location: 1-564 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 10-118 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 10-118 bp Feature: domain Description: GIIM Note: maturase Location: 172-391 bp Feature: domain Description: GIIM Note: maturase Location: 172-39 1 bp Feature: gene Location: 675-935 bp Feature: domain Description: iSH2_PIK3R1 Location: 738-927 bp Feature: domain Description: iSH2_PIK3R1 Location: 738-9 27 bp Feature: gene Location: 976-2214 bp Feature: domain Description: FlgJ Location: 988-1456 bp Feature: domain Description: FlgJ Location: 9 88-1456 bp Feature: domain Description: MurNAc-LAA Location: 1468-1981 bp Feature: domain Description: MurNAc-LAA Location: 1468-19 81 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), iSH2_PIK3R1 (cd12924), FlgJ (COG1705), MurNAc-LAA (cl02713)

Seq: JDRY01000002.1 Clostridium botulinum C/D str. DC5 Contig2, whole genome shotgun sequence (28417 bp)
Overview 1 RT 1: 24711-28417 bp Neighborhood of RT #1 [24711, 28417] YjiL EstA RVT-GII Feature: gene Location: 24711-25658 bp Feature: domain Description: YjiL Location: 24714-25485 bp Feature: domain Description: YjiL Location: 24714-25485 bp Feature: gene Location: 26222-27520 bp Feature: domain Description: EstA Location: 26312-27503 bp Feature: domain Description: EstA Location: 26312-27503 bp Feature: gene Location: 28000-28417 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 28357-28417 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 28357-28417 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT YjiL (COG1924), EstA (COG1075), RVT-GII