myRT

myRT report for GCA_000773865.1_ASM77386v1

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Seq: JRPN01000046.1 Bradyrhizobium japonicum strain Is-34 contig_46, whole genome shotgun sequence (70692 bp)
Overview 1 RT 1: 4625-7614 bp Neighborhood of RT #1 [4625, 7757] RVT-GII HTH_XRE InsE Feature: gene Location: 4625-4972 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4841-4970 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4841 -4970 bp Feature: gene Location: 6231-6512 bp Feature: domain Description: HTH_XRE Location: 6261-6426 bp Feature: domain Description: HTH_XRE Location: 6261 -6426 bp Feature: gene Location: 7320-7757 bp Feature: domain Description: InsE Location: 7386-7614 bp Feature: domain Description: InsE Location: 7386-761 4 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, HTH_XRE (smart00530), InsE (COG2963)

Seq: JRPN01000033.1 Bradyrhizobium japonicum strain Is-34 contig_33, whole genome shotgun sequence (30269 bp)
Overview 1 RT 1: 1459-6245 bp Neighborhood of RT #1 [1459, 6334] RVT-GII CpaD Feature: gene Location: 1459-2868 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1813-2503 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1813-2 503 bp Feature: gene Location: 3161-5476 bp Feature: gene Location: 5672-6334 bp Feature: domain Description: CpaD Location: 5705-6245 bp Feature: domain Description: CpaD Location: 5705-62 45 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, CpaD (COG5461)

Seq: JRPN01000012.1 Bradyrhizobium japonicum strain Is-34 contig_12, whole genome shotgun sequence (1712 bp)
Overview 1 RT 1: 113-1343 bp Neighborhood of RT #1 [113, 1435] RVT-GII GIIM Feature: gene Location: 113-1435 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 407-1064 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 407-1064 bp Feature: domain Description: GIIM Note: maturase Location: 1139-1343 bp Feature: domain Description: GIIM Note: maturase Location: 113 9-13 43 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: JRPN01000011.1 Bradyrhizobium japonicum strain Is-34 contig_11, whole genome shotgun sequence (54836 bp)
Overview 1 RT 1: 192-5226 bp Neighborhood of RT #1 [192, 5226] Tra5 HTH_Tnp_1 RVT-GII GIIM Feature: gene Location: 192-1064 bp Feature: domain Description: Tra5 Location: 234-942 bp Feature: domain Description: Tra5 Location: 234 -94 2 bp Feature: gene Location: 1042-1296 bp Feature: domain Description: HTH_Tnp_1 Location: 1048-1255 bp Feature: domain Description: HTH_Tnp_1 Location: 104 8-1255 bp Feature: gene Location: 1473-2717 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1674-2331 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1674 -2331 bp Feature: domain Description: GIIM Note: maturase Location: 2409-2637 bp Feature: domain Description: GIIM Note: maturase Location: 24 09-2637 bp Feature: gene Location: 4226-4459 bp Feature: gene Location: 4927-5226 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_Tnp_1 (pfam01527), RVT-GII, GIIM (pfam08388), Tra5 (COG2801)