myRT

myRT report for GCA_000774175.1_BPH

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Seq: KN322993.1 Burkholderia pseudomallei MSHR983 genomic scaffold scaffold2, whole genome shotgun sequence (3273750 bp)
Overview 1 RT 1: 175326-181622 bp 2 RT 2: 223994-229492 bp 3 RT 3: 680268-684036 bp Neighborhood of RT #1 [175326, 181654] Alginate_lyase Alginate_lyase DDE_Tnp_IS66 DDE_Tnp_IS66_C RVT-GII GIIM COG3436 TnpB_IS66 Neighborhood of RT #2 [223994, 229524] DDE_Tnp_IS66 DDE_Tnp_IS66_C RVT-GII GIIM COG3436 rve TnpB_IS66 Neighborhood of RT #3 [680268, 684068] DDE_Tnp_IS66 DDE_Tnp_IS66_C DDE_Tnp_IS66 RVT-GII GIIM COG3436 TnpB_IS66 Feature: gene Location: 175326-176843 bp Ori: KGU59842.1 Feature: domain Description: Alginate_lyase Location: 175884-176295 bp Feature: domain Description: Alginate_lyase Location: 1 75884-1 76295 bp Feature: domain Description: Alginate_lyase Location: 176484-176640 bp Feature: domain Description: Alginate_lyase Location: 1 76484-1 76640 bp Feature: gene Location: 177841-178722 bp Ori: KGU59321.1 Feature: domain Description: DDE_Tnp_IS66 Location: 177847-178567 bp Feature: domain Description: DDE_Tnp_IS66 Location: 1 77847-1 78567 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 178588-178699 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 1 78588-1 78699 bp Feature: gene Location: 178840-180102 bp Ori: KGU59561.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 179044-179701 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 79044-1 79701 bp Feature: domain Description: GIIM Note: maturase Location: 179779-179995 bp Feature: domain Description: GIIM Note: maturase Location: 1 79779-1 79995 bp Feature: gene Location: 180620-181255 bp Ori: KGU59537.1 Feature: domain Description: COG3436 Location: 180929-181232 bp Feature: domain Description: COG3436 Location: 1 80929-1 81 232 bp Feature: gene Location: 181319-181654 bp Ori: KGU59664.1 Feature: domain Description: TnpB_IS66 Location: 181337-181622 bp Feature: domain Description: TnpB_IS66 Location: 1 81 337-1 81 622 bp Feature: gene Location: 223994-224218 bp Feature: gene Location: 224574-225455 bp Ori: KGU60458.1 Feature: domain Description: DDE_Tnp_IS66 Location: 224580-225300 bp Feature: domain Description: DDE_Tnp_IS66 Location: 224580-225300 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 225321-225432 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 225321 -225432 bp Feature: gene Location: 225573-226835 bp Ori: KGU60381.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 225777-226434 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 225777-226434 bp Feature: domain Description: GIIM Note: maturase Location: 226512-226728 bp Feature: domain Description: GIIM Note: maturase Location: 22651 2-226728 bp Feature: gene Location: 227353-227988 bp Ori: KGU59314.1 Feature: domain Description: COG3436 Location: 227662-227965 bp Feature: domain Description: COG3436 Location: 227662-227965 bp Feature: gene Location: 228052-229524 bp Ori: KGU58854.1 Feature: domain Description: rve Location: 228442-228820 bp Feature: domain Description: rve Location: 228442-228820 bp Feature: domain Description: TnpB_IS66 Location: 229300-229492 bp Feature: domain Description: TnpB_IS66 Location: 229300-229492 bp Feature: gene Location: 680268-680765 bp Ori: KGU58660.1 Feature: domain Description: DDE_Tnp_IS66 Location: 680277-680610 bp Feature: domain Description: DDE_Tnp_IS66 Location: 680277-68061 0 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 680631-680742 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 680631 -680742 bp Feature: gene Location: 680834-681094 bp Ori: KGU59936.1 Feature: domain Description: DDE_Tnp_IS66 Location: 680840-681083 bp Feature: domain Description: DDE_Tnp_IS66 Location: 680840-681 083 bp Feature: gene Location: 681282-682544 bp Ori: KGU59721.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 681486-682143 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 681 486-6821 43 bp Feature: domain Description: GIIM Note: maturase Location: 682221-682437 bp Feature: domain Description: GIIM Note: maturase Location: 682221 -682437 bp Feature: gene Location: 683062-683691 bp Ori: KGU59787.1 Feature: domain Description: COG3436 Location: 683368-683668 bp Feature: domain Description: COG3436 Location: 683368-683668 bp Feature: gene Location: 683721-684068 bp Ori: KGU60478.1 Feature: domain Description: TnpB_IS66 Location: 683748-684036 bp Feature: domain Description: TnpB_IS66 Location: 683748-684036 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Alginate_lyase (pfam05426), DDE_Tnp_IS66 (pfam03050), DDE_Tnp_IS66_C (pfam13817), RVT-GII, GIIM (pfam08388), COG3436 (Transposase ), TnpB_IS66 (pfam05717), rve (pfam00665)

Seq: KN322992.1 Burkholderia pseudomallei MSHR983 genomic scaffold scaffold1, whole genome shotgun sequence (4147978 bp)
Overview 1 RT 1: 732682-738530 bp Neighborhood of RT #1 [732682, 738530] YwqK RVT-UG17 SLATT_5 Feature: gene Location: 732682-733875 bp Ori: KGU63870.1 Feature: domain Description: YwqK Location: 733021-733291 bp Feature: domain Description: YwqK Location: 73302 1-7332 91 bp Feature: gene Location: 733978-734466 bp Feature: gene Location: 735776-736897 bp Ori: KGU63082.1 Feature: RT Description: RVT-UG17 Note: UG17 RT Location: 735779-736343 bp Feature: RT Description: RVT-UG17 Note: UG17 RT Location: 735779-736343 bp Feature: gene Location: 737219-737743 bp Ori: KGU63962.1 Feature: domain Description: SLATT_5 Location: 737222-737705 bp Feature: domain Description: SLATT_5 Location: 7372 2 2 -737705 bp Feature: gene Location: 737796-738530 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT YwqK (COG2849), RVT-UG17, SLATT_5 (pfam18160)