myRT

myRT report for GCA_000777735.1_ASM77773v1

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Seq: JSIY01000072.1 (5268 bp)
Overview 1 RT 1: 2-4388 bp Neighborhood of RT #1 [2, 4408] RVT-GII GIIM PHA02517 LZ_Tnp_IS66 zf-IS66 DDE_Tnp_IS66 DDE_Tnp_IS66_C Feature: gene Location: 2-364 bp Feature: gene Location: 658-2181 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 931-1663 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 931 -1 663 bp Feature: domain Description: GIIM Note: maturase Location: 1738-1936 bp Feature: domain Description: GIIM Note: maturase Location: 1 738-1 936 bp Feature: gene Location: 2358-2738 bp Feature: domain Description: PHA02517 Location: 2361-2730 bp Feature: domain Description: PHA0251 7 Location: 2361 -2730 bp Feature: gene Location: 2873-4408 bp Feature: domain Description: LZ_Tnp_IS66 Location: 2990-3203 bp Feature: domain Description: LZ_Tnp_IS66 Location: 2990-3203 bp Feature: domain Description: zf-IS66 Location: 3224-3356 bp Feature: domain Description: zf-IS66 Location: 3224-3356 bp Feature: domain Description: DDE_Tnp_IS66 Location: 3401-4256 bp Feature: domain Description: DDE_Tnp_IS66 Location: 3401 -4256 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 4277-4388 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 4277-4388 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PHA02517 (putative transposase OrfB; Reviewed), LZ_Tnp_IS66 (pfam13007), zf-IS66 (pfam13005), DDE_Tnp_IS66 (pfam03050), DDE_Tnp_IS66_C (pfam13817), RVT-GII, GIIM (pfam08388)

Seq: JSIY01000024.1 (3472 bp)
Overview 1 RT 1: 3-3002 bp Neighborhood of RT #1 [3, 3397] YafY DUF932 RVT_N RVT-GII YkfC Feature: gene Location: 3-200 bp Feature: domain Description: YafY Location: 21-192 bp Feature: domain Description: YafY Location: 2 1-192 bp Feature: gene Location: 417-1163 bp Feature: domain Description: DUF932 Location: 471-1128 bp Feature: domain Description: DUF932 Location: 471-112 8 bp Feature: gene Location: 1688-3397 bp Feature: RT Description: RVT_N Location: 1742-1985 bp Feature: RT Description: RVT_N Location: 1742 -1985 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2030-2666 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 030-2 666 bp Feature: domain Description: YkfC Location: 2786-3002 bp Feature: domain Description: YkfC Location: 2 786-3002 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, YkfC (COG3344), YafY (COG2378), DUF932 (pfam06067)

Seq: JSIY01000146.1 (25319 bp)
Overview 1 RT 1: 2-3862 bp 2 RT 2: 20180-24344 bp Neighborhood of RT #1 [2, 3862] RVT-GII GIIM Neighborhood of RT #2 [20180, 24739] YafY IS5 YeeP RVT_N RVT-GII YkfC Feature: gene Location: 2-364 bp Feature: gene Location: 658-2181 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 931-1663 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 93 1-1663 bp Feature: domain Description: GIIM Note: maturase Location: 1738-1936 bp Feature: domain Description: GIIM Note: maturase Location: 173 8-193 6 bp Feature: gene Location: 2804-3481 bp Feature: gene Location: 3698-3862 bp Feature: gene Location: 20180-21439 bp Feature: domain Description: YafY Location: 20537-20687 bp Feature: domain Description: YafY Location: 2053 7-20687 bp Feature: domain Description: IS5 Location: 20891-21416 bp Feature: domain Description: IS5 Location: 20891-21416 bp Feature: gene Location: 21871-22734 bp Feature: domain Description: YeeP Location: 21874-22732 bp Feature: domain Description: YeeP Location: 21874-2273 2 bp Feature: gene Location: 23030-24739 bp Feature: RT Description: RVT_N Location: 23084-23327 bp Feature: RT Description: RVT_N Location: 23 084-23 3 27 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 23372-24008 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 23 3 72-24008 bp Feature: domain Description: YkfC Location: 24128-24344 bp Feature: domain Description: YkfC Location: 24128-243 44 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), YafY (COG2378), IS5 (COG3039), YeeP (COG3596), RVT_N (pfam13655), YkfC (COG3344)

Seq: JSIY01000060.1 (3921 bp)
Overview 1 RT 1: 63-3584 bp Neighborhood of RT #1 [63, 3829] HTH_38 Tra8 PHA02517 RVT-GII GIIM Feature: gene Location: 63-1214 bp Feature: domain Description: HTH_38 Location: 72-186 bp Feature: domain Description: HTH_38 Location: 72-186 bp Feature: domain Description: Tra8 Location: 222-1203 bp Feature: domain Description: Tra8 Location: 222-1203 bp Feature: gene Location: 1211-1714 bp Feature: domain Description: PHA02517 Location: 1313-1649 bp Feature: domain Description: PHA02517 Location: 1313-164 9 bp Feature: gene Location: 2306-3829 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2579-3311 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2579-3311 bp Feature: domain Description: GIIM Note: maturase Location: 3386-3584 bp Feature: domain Description: GIIM Note: maturase Location: 3386-3584 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388), HTH_38 (pfam13936), Tra8 (COG2826)

Seq: JSIY01000058.1 (3730 bp)
Overview 1 RT 1: 10-3393 bp Neighborhood of RT #1 [10, 3638] HTH_38 Tra8 PHA02517 RVT-GII GIIM Feature: gene Location: 10-1161 bp Feature: domain Description: HTH_38 Location: 19-133 bp Feature: domain Description: HTH_38 Location: 19-133 bp Feature: domain Description: Tra8 Location: 169-1150 bp Feature: domain Description: Tra8 Location: 169-115 0 bp Feature: gene Location: 1311-1523 bp Feature: domain Description: PHA02517 Location: 1314-1458 bp Feature: domain Description: PHA025 17 Location: 1314-145 8 bp Feature: gene Location: 2115-3638 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2388-3120 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2388-3120 bp Feature: domain Description: GIIM Note: maturase Location: 3195-3393 bp Feature: domain Description: GIIM Note: maturase Location: 3195 -3393 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_38 (pfam13936), Tra8 (COG2826), PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388)

Seq: JSIY01000098.1 (2611 bp)
Overview 1 RT 1: 76-2610 bp Neighborhood of RT #1 [76, 2609] RVT_N RVT-GII YkfC DUF932 Feature: gene Location: 76-1785 bp Feature: RT Description: RVT_N Location: 130-373 bp Feature: RT Description: RVT_N Location: 130-373 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 418-1054 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 418-1054 bp Feature: domain Description: YkfC Location: 1174-1390 bp Feature: domain Description: YkfC Location: 1174-1390 bp Feature: gene Location: 1826-2080 bp Feature: gene Location: 2310-2609 bp Feature: domain Description: DUF932 Location: 2364-2610 bp Feature: domain Description: DUF932 Location: 236 4-26 10 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF932 (pfam06067), RVT_N (pfam13655), RVT-GII, YkfC (COG3344)

Seq: JSIY01000099.1 (2940 bp)
Overview 1 RT 1: 581-2937 bp Neighborhood of RT #1 [581, 2939] RVT_N RVT-GII YkfC YeeP Feature: gene Location: 581-2290 bp Feature: RT Description: RVT_N Location: 635-878 bp Feature: RT Description: RVT_N Location: 635-87 8 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 923-1559 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 923-1559 bp Feature: domain Description: YkfC Location: 1679-1895 bp Feature: domain Description: YkfC Location: 167 9-1895 bp Feature: gene Location: 2586-2939 bp Feature: domain Description: YeeP Location: 2589-2937 bp Feature: domain Description: YeeP Location: 2589-2937 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT YeeP (COG3596), RVT_N (pfam13655), RVT-GII, YkfC (COG3344)