myRT

myRT report for GCA_000779275.1_ASM77927v1

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Seq: JSPI01000111.1 (164842 bp)
Overview 1 RT 1: 30204-36447 bp Neighborhood of RT #1 [30204, 36584] Phage_integrase RVT-UG5 nitrilase AbiEi_3_N AbiEi_3 AbiEii Feature: gene Location: 30204-30470 bp Feature: domain Description: Phage_integrase Location: 30270-30366 bp Feature: domain Description: Phage_integrase Location: 30270-30366 bp Feature: gene Location: 30553-31023 bp Feature: gene Location: 31370-34579 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 31898-32387 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 31 898-32387 bp Feature: domain Description: nitrilase Location: 33893-34490 bp Feature: domain Description: nitrilase Location: 33893-34490 bp Feature: gene Location: 34874-35677 bp Feature: domain Description: AbiEi_3_N Location: 34907-35168 bp Feature: domain Description: AbiEi_3_N Location: 34907-351 68 bp Feature: domain Description: AbiEi_3 Location: 35180-35636 bp Feature: domain Description: AbiEi_3 Location: 351 80-35636 bp Feature: gene Location: 35664-36584 bp Feature: domain Description: AbiEii Location: 35706-36447 bp Feature: domain Description: AbiEii Location: 35706-36447 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Phage_integrase (pfam00589), RVT-UG5, nitrilase (cl11424), AbiEi_3_N (pfam17194), AbiEi_3 (pfam11459), AbiEii (pfam08843)

Seq: JSPI01000050.1 (8124 bp)
Overview 1 RT 1: 4785-8042 bp Neighborhood of RT #1 [4785, 8042] DUF905 PRK13732 RVT-GII Intron_maturas2 HNHc InsE Feature: gene Location: 4785-5018 bp Feature: domain Description: DUF905 Location: 4815-5013 bp Feature: domain Description: DUF905 Location: 4815-5013 bp Feature: gene Location: 5081-5533 bp Feature: domain Description: PRK13732 Location: 5087-5531 bp Feature: domain Description: PRK13732 Location: 5087-5531 bp Feature: gene Location: 5728-7509 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5875-6706 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5875-6706 bp Feature: domain Description: Intron_maturas2 Location: 6820-7078 bp Feature: domain Description: Intron_maturas2 Location: 682 0-7078 bp Feature: domain Description: HNHc Note: nucleases Location: 7252-7414 bp Feature: domain Description: HNHc Note: nucleases Location: 72 52 -7414 bp Feature: gene Location: 7566-7892 bp Feature: domain Description: InsE Location: 7569-7890 bp Feature: domain Description: InsE Location: 7569-7890 bp Feature: gene Location: 7914-8042 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF905 (pfam06006), PRK13732 (single-stranded DNA-binding protein; Provisional), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), InsE (COG2963)

Seq: JSPI01000069.1 (12713 bp)
Overview 1 RT 1: 267-2418 bp Neighborhood of RT #1 [267, 2426] PHA02517 RVT-GII PRK10173 PRK10173 Feature: gene Location: 267-548 bp Feature: domain Description: PHA02517 Location: 273-483 bp Feature: domain Description: PHA02517 Location: 273 -483 bp Feature: gene Location: 1140-1643 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1413-1482 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1413 -1482 bp Feature: gene Location: 1682-1993 bp Feature: domain Description: PRK10173 Location: 1685-1904 bp Feature: domain Description: PRK10173 Location: 1685-1904 bp Feature: gene Location: 1977-2426 bp Feature: domain Description: PRK10173 Location: 1980-2418 bp Feature: domain Description: PRK10173 Location: 1980-2418 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, PRK10173 (glucose-1-phosphatase/inositol phosphatase; Provisional)

Seq: JSPI01000112.1 (57390 bp)
Overview 1 RT 1: 25397-28462 bp Neighborhood of RT #1 [25397, 28462] RVT-GII GIIM RVT-GII Feature: gene Location: 25397-25567 bp Feature: gene Location: 25705-25884 bp Feature: gene Location: 25983-26504 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 25989-26271 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 25989-26271 bp Feature: domain Description: GIIM Note: maturase Location: 26319-26499 bp Feature: domain Description: GIIM Note: maturase Location: 26319-264 99 bp Feature: gene Location: 26532-27071 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 26862-26940 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 26862-2694 0 bp Feature: gene Location: 27102-27299 bp Feature: gene Location: 27557-28462 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)