myRT

myRT report for GCA_000779995.1_ASM77999v1

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Seq: JSMJ01000086.1 (26892 bp)
Overview 1 RT 1: 24533-26807 bp Neighborhood of RT #1 [24533, 26890] RVT-GII RVT-GII Feature: gene Location: 24533-24700 bp Feature: gene Location: 25072-25275 bp Feature: gene Location: 25682-26056 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 25688-25859 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 25688-25859 bp Feature: gene Location: 26072-26890 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 26351-26807 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 26351 -26807 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII

Seq: JSMJ01000066.1 (103701 bp)
Overview 1 RT 1: 98942-103466 bp Neighborhood of RT #1 [98942, 103615] HTH_29 HTH_33 DDE_3 RVT-AbiP2 PRK09183 COG4584 Feature: gene Location: 98942-99232 bp Feature: gene Location: 99242-100303 bp Feature: domain Description: HTH_29 Location: 99362-99533 bp Feature: domain Description: HTH_2 9 Location: 99362 -99533 bp Feature: domain Description: HTH_33 Location: 99566-99728 bp Feature: domain Description: HTH_33 Location: 99566-9972 8 bp Feature: domain Description: DDE_3 Location: 99770-100199 bp Feature: domain Description: DDE_3 Location: 99770-100199 bp Feature: gene Location: 100405-101775 bp Feature: RT Description: RVT-AbiP2 Note: AbiP2 RT Location: 100666-101122 bp Feature: RT Description: RVT-AbiP2 Note: AbiP2 RT Location: 100666-10112 2 bp Feature: gene Location: 101814-102593 bp Feature: domain Description: PRK09183 Location: 101820-102591 bp Feature: domain Description: PRK09183 Location: 10182 0-102 591 bp Feature: gene Location: 102593-103615 bp Feature: domain Description: COG4584 Location: 102596-103466 bp Feature: domain Description: COG4584 Location: 102 596-103466 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_29 (pfam13551), HTH_33 (pfam13592), DDE_3 (pfam13358), RVT-AbiP2, PRK09183 (transposase/IS protein; Provisional), COG4584 (Transposase )

Seq: JSMJ01000033.1 (5439 bp)
Overview 1 RT 1: 1-2110 bp Neighborhood of RT #1 [1, 2148] RVT-GII GIIM PHA02517 InsE Feature: gene Location: 1-1242 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4-724 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4-724 bp Feature: domain Description: GIIM Note: maturase Location: 799-997 bp Feature: domain Description: GIIM Note: maturase Location: 799-997 bp Feature: gene Location: 1419-1715 bp Feature: domain Description: PHA02517 Location: 1422-1671 bp Feature: domain Description: PHA02517 Location: 1422-1671 bp Feature: gene Location: 1744-2148 bp Feature: domain Description: InsE Location: 1774-2110 bp Feature: domain Description: InsE Location: 1774-2110 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), PHA02517 (putative transposase OrfB; Reviewed), InsE (COG2963)