myRT

myRT report for GCA_000780155.1_ASM78015v1

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Seq: JSMQ01000037.1 (89215 bp)
Overview 1 RT 1: 87160-89149 bp Neighborhood of RT #1 [87160, 89214] PRK10173 PRK10173 RVT-GII PHA02517 Feature: gene Location: 87160-87609 bp Feature: domain Description: PRK10173 Location: 87163-87601 bp Feature: domain Description: PRK1 01 73 Location: 871 63-87601 bp Feature: gene Location: 87593-87904 bp Feature: domain Description: PRK10173 Location: 87596-87815 bp Feature: domain Description: PRK1 01 73 Location: 87596-8781 5 bp Feature: gene Location: 87943-88446 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 88216-88285 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8821 6-88285 bp Feature: gene Location: 88400-88825 bp Feature: gene Location: 89038-89214 bp Feature: domain Description: PHA02517 Location: 89041-89149 bp Feature: domain Description: PHA0251 7 Location: 89041 -891 49 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK10173 (glucose-1-phosphatase/inositol phosphatase; Provisional), RVT-GII, PHA02517 (putative transposase OrfB; Reviewed)

Seq: JSMQ01000009.1 (5546 bp)
Overview 1 RT 1: 2348-5480 bp Neighborhood of RT #1 [2348, 5545] InsE PHA02517 RVT-GII GIIM PHA02517 Feature: gene Location: 2348-2752 bp Feature: domain Description: InsE Location: 2378-2714 bp Feature: domain Description: InsE Location: 2 378-2 714 bp Feature: gene Location: 2781-3137 bp Feature: domain Description: PHA02517 Location: 2784-3093 bp Feature: domain Description: PHA02 517 Location: 2 784-3093 bp Feature: gene Location: 3254-4777 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3527-4259 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 352 7-42 59 bp Feature: domain Description: GIIM Note: maturase Location: 4334-4532 bp Feature: domain Description: GIIM Note: maturase Location: 4334-4532 bp Feature: gene Location: 5369-5545 bp Feature: domain Description: PHA02517 Location: 5372-5480 bp Feature: domain Description: PHA02 517 Location: 5372 -5480 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT InsE (COG2963), PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388)

Seq: JSMQ01000056.1 (119476 bp)
Overview 1 RT 1: 115771-119471 bp Neighborhood of RT #1 [115771, 119473] HTH_29 HTH_33 DDE_3 RVT-AbiP2 PRK09183 Feature: gene Location: 115771-116061 bp Feature: gene Location: 116095-117132 bp Feature: domain Description: HTH_29 Location: 116191-116362 bp Feature: domain Description: HTH_29 Location: 116191-1163 62 bp Feature: domain Description: HTH_33 Location: 116395-116557 bp Feature: domain Description: HTH_3 3 Location: 1163 95-116557 bp Feature: domain Description: DDE_3 Location: 116599-117028 bp Feature: domain Description: DDE_3 Location: 116599-117028 bp Feature: gene Location: 117234-118604 bp Feature: RT Description: RVT-AbiP2 Note: AbiP2 RT Location: 117495-117951 bp Feature: RT Description: RVT-AbiP2 Note: AbiP2 RT Location: 117495-117951 bp Feature: gene Location: 118643-119473 bp Feature: domain Description: PRK09183 Location: 118700-119471 bp Feature: domain Description: PRK09183 Location: 118700-119471 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_29 (pfam13551), HTH_33 (pfam13592), DDE_3 (pfam13358), RVT-AbiP2, PRK09183 (transposase/IS protein; Provisional)