myRT

myRT report for GCA_000780335.1_ASM78033v1

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Seq: JSMX01000105.1 (15904 bp)
Overview 1 RT 1: 7522-14676 bp Neighborhood of RT #1 [7522, 14676] RVT-GII DDE_Tnp_IS66 HTH_23 InsE RVT-GII RVT-GII Feature: gene Location: 7522-7797 bp Feature: gene Location: 7993-8154 bp Feature: gene Location: 8236-8946 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8437-8938 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8437-8938 bp Feature: gene Location: 8941-9360 bp Feature: gene Location: 9398-9787 bp Feature: domain Description: DDE_Tnp_IS66 Location: 9503-9746 bp Feature: domain Description: DDE_Tnp_IS66 Location: 9503-9746 bp Feature: gene Location: 11206-11856 bp Feature: domain Description: HTH_23 Location: 11257-11356 bp Feature: domain Description: HTH_23 Location: 1 1 257-1 1 356 bp Feature: domain Description: InsE Location: 11482-11833 bp Feature: domain Description: InsE Location: 1 1 482-1 1 833 bp Feature: gene Location: 12228-12431 bp Feature: gene Location: 12838-13212 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 12844-13015 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 2844-1 301 5 bp Feature: gene Location: 13228-14040 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 13501-13957 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 3501 -1 3957 bp Feature: gene Location: 14161-14364 bp Feature: gene Location: 14443-14676 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, DDE_Tnp_IS66 (pfam03050), HTH_23 (pfam13384), InsE (COG2963)

Seq: JSMX01000084.1 (131834 bp)
Overview 1 RT 1: 85093-88520 bp Neighborhood of RT #1 [85093, 88520] HTH_XRE RVT-Retrons PRK13889 Feature: gene Location: 85093-85308 bp Feature: gene Location: 85399-85680 bp Feature: domain Description: HTH_XRE Location: 85414-85579 bp Feature: domain Description: HTH_XRE Location: 85414-85579 bp Feature: gene Location: 85892-86773 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 85898-86366 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 85898-86366 bp Feature: gene Location: 86845-88350 bp Feature: domain Description: PRK13889 Location: 86848-87448 bp Feature: domain Description: PRK13889 Location: 86848-87448 bp Feature: gene Location: 88383-88520 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_XRE (smart00530), RVT-Retrons, PRK13889 (conjugal transfer relaxase TraA; Provisional)

Seq: JSMX01000073.1 (17345 bp)
Overview 1 RT 1: 283-3625 bp Neighborhood of RT #1 [283, 3625] RVT-GII GIIM InsG Transposase_20 Feature: gene Location: 283-1671 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 613-1231 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 613 -123 1 bp Feature: domain Description: GIIM Note: maturase Location: 1279-1510 bp Feature: domain Description: GIIM Note: maturase Location: 1279-1510 bp Feature: gene Location: 2058-3449 bp Feature: domain Description: InsG Location: 2061-2982 bp Feature: domain Description: InsG Location: 2061-2982 bp Feature: domain Description: Transposase_20 Location: 3105-3351 bp Feature: domain Description: Transposase_20 Location: 3 105-3 3 51 bp Feature: gene Location: 3458-3625 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), InsG (COG3385), Transposase_20 (pfam02371)