myRT

myRT report for GCA_000780795.1_ASM78079v1

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Seq: JSNQ01000040.1 (3066 bp)
Overview 1 RT 1: 1328-2705 bp Neighborhood of RT #1 [1328, 2929] InsE PHA02517 RVT-GII GIIM Feature: gene Location: 1328-1732 bp Feature: domain Description: InsE Location: 1358-1694 bp Feature: domain Description: InsE Location: 1 358-1 694 bp Feature: gene Location: 1761-2117 bp Feature: domain Description: PHA02517 Location: 1764-2073 bp Feature: domain Description: PHA0251 7 Location: 1 764-2073 bp Feature: gene Location: 2234-2929 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2240-2411 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2240-241 1 bp Feature: domain Description: GIIM Note: maturase Location: 2486-2705 bp Feature: domain Description: GIIM Note: maturase Location: 2486-2705 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT InsE (COG2963), PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388)

Seq: JSNQ01000089.1 (8718 bp)
Overview 1 RT 1: 3-3597 bp Neighborhood of RT #1 [3, 3680] zf-IS66 DDE_Tnp_IS66 RVT-GII GIIM rve_3 Feature: gene Location: 3-1190 bp Feature: domain Description: zf-IS66 Location: 135-267 bp Feature: domain Description: zf-IS66 Location: 135-2 67 bp Feature: domain Description: DDE_Tnp_IS66 Location: 312-1149 bp Feature: domain Description: DDE_Tnp_IS66 Location: 312 -1149 bp Feature: gene Location: 1652-2884 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1853-2507 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1853-2 507 bp Feature: domain Description: GIIM Note: maturase Location: 2585-2807 bp Feature: domain Description: GIIM Note: maturase Location: 2 585-2 807 bp Feature: gene Location: 2910-3077 bp Feature: gene Location: 3222-3680 bp Feature: domain Description: rve_3 Location: 3408-3597 bp Feature: domain Description: rve_3 Location: 3408-3597 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT zf-IS66 (pfam13005), DDE_Tnp_IS66 (pfam03050), RVT-GII, GIIM (pfam08388), rve_3 (pfam13683)

Seq: JSNQ01000023.1 (5089 bp)
Overview 1 RT 1: 865-4757 bp Neighborhood of RT #1 [865, 4981] rve PHA02517 RVT-GII RVT-GII GIIM Feature: gene Location: 865-2364 bp Feature: domain Description: rve Location: 1237-1630 bp Feature: domain Description: rve Location: 123 7-163 0 bp Feature: gene Location: 2585-2866 bp Feature: domain Description: PHA02517 Location: 2591-2801 bp Feature: domain Description: PHA02517 Location: 2591-2801 bp Feature: gene Location: 3458-4216 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3731-4184 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3 73 1-4184 bp Feature: gene Location: 4286-4981 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4292-4463 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4292-4463 bp Feature: domain Description: GIIM Note: maturase Location: 4538-4757 bp Feature: domain Description: GIIM Note: maturase Location: 453 8-4757 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT rve (pfam00665), PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388)

Seq: JSNQ01000015.1 (102293 bp)
Overview 1 RT 1: 2-3194 bp Neighborhood of RT #1 [2, 3194] PRK09183 RVT-AbiP2 HTH_29 HTH_33 DDE_3 Feature: gene Location: 2-322 bp Feature: domain Description: PRK09183 Location: 5-320 bp Feature: domain Description: PRK09183 Location: 5-320 bp Feature: gene Location: 361-1731 bp Feature: RT Description: RVT-AbiP2 Note: AbiP2 RT Location: 622-1078 bp Feature: RT Description: RVT-AbiP2 Note: AbiP2 RT Location: 622-1078 bp Feature: gene Location: 1833-2870 bp Feature: domain Description: HTH_29 Location: 1929-2100 bp Feature: domain Description: HTH_29 Location: 1929-2100 bp Feature: domain Description: HTH_33 Location: 2133-2295 bp Feature: domain Description: HTH_33 Location: 2133-2295 bp Feature: domain Description: DDE_3 Location: 2337-2766 bp Feature: domain Description: DDE_3 Location: 2337-2766 bp Feature: gene Location: 2904-3194 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK09183 (transposase/IS protein; Provisional), RVT-AbiP2, HTH_29 (pfam13551), HTH_33 (pfam13592), DDE_3 (pfam13358)