myRT

myRT report for GCA_000780835.1_ASM78083v1

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Seq: JSNS01000182.1 (12545 bp)
Overview 1 RT 1: 2-2207 bp 2 RT 2: 10806-12320 bp Neighborhood of RT #1 [2, 2221] RVT-GII Asparaginase_2 DUF5339 Neighborhood of RT #2 [10806, 12544] FadR PHA02517 RVT-GII GIIM Feature: gene Location: 2-247 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 14-167 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 4-1 67 bp Feature: gene Location: 574-1605 bp Feature: domain Description: Asparaginase_2 Location: 664-1597 bp Feature: domain Description: Asparaginase_2 Location: 664-1 597 bp Feature: gene Location: 1943-2221 bp Feature: domain Description: DUF5339 Location: 2006-2207 bp Feature: domain Description: DUF5339 Location: 2006-2207 bp Feature: gene Location: 10806-10940 bp Feature: domain Description: FadR Location: 10821-10923 bp Feature: domain Description: FadR Location: 1 0821 -1 0923 bp Feature: gene Location: 11160-11600 bp Feature: domain Description: PHA02517 Location: 11163-11571 bp Feature: domain Description: PHA0251 7 Location: 1 1 1 63-1 1 571 bp Feature: gene Location: 11729-12544 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 11810-12026 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 1 81 0-1 2026 bp Feature: domain Description: GIIM Note: maturase Location: 12101-12320 bp Feature: domain Description: GIIM Note: maturase Location: 1 21 01 -1 2320 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Asparaginase_2 (pfam01112), DUF5339 (pfam17274), FadR (COG2186), PHA02517 (putative transposase OrfB; Reviewed), GIIM (pfam08388)

Seq: JSNS01000049.1 (2698 bp)
Overview 1 RT 1: 1015-2697 bp Neighborhood of RT #1 [1015, 2696] InsE RVT-GII Feature: gene Location: 1015-1326 bp Feature: domain Description: InsE Location: 1018-1309 bp Feature: domain Description: InsE Location: 1018-1309 bp Feature: gene Location: 1350-1739 bp Feature: gene Location: 2370-2696 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2643-2697 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 643-2 697 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT InsE (COG2963), RVT-GII

Seq: JSNS01000045.1 (2272 bp)
Overview 1 RT 1: 93-2269 bp Neighborhood of RT #1 [93, 2269] RVT-GII GIIM Feature: gene Location: 93-1616 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 366-1098 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3 66-1098 bp Feature: domain Description: GIIM Note: maturase Location: 1173-1371 bp Feature: domain Description: GIIM Note: maturase Location: 1173 -13 71 bp Feature: gene Location: 1910-2269 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: JSNS01000035.1 (1120 bp)
Overview 1 RT 1: 434-1118 bp Neighborhood of RT #1 [434, 1117] RVT-GII RVT-GII Feature: gene Location: 434-949 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 740-818 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 74 0-818 bp Feature: gene Location: 977-1117 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 986-1118 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 986-1118 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII

Seq: JSNS01000092.1 (111191 bp)
Overview 1 RT 1: 22486-28729 bp Neighborhood of RT #1 [22486, 28866] Phage_integrase RVT-UG5 nitrilase AbiEi_3_N AbiEi_3 AbiEii Feature: gene Location: 22486-22752 bp Feature: domain Description: Phage_integrase Location: 22552-22648 bp Feature: domain Description: Phage_integrase Location: 225 5 2-22648 bp Feature: gene Location: 22835-23305 bp Feature: gene Location: 23652-26861 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 24180-24669 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 24180-24669 bp Feature: domain Description: nitrilase Location: 26175-26772 bp Feature: domain Description: nitrilase Location: 26175 -26772 bp Feature: gene Location: 27156-27959 bp Feature: domain Description: AbiEi_3_N Location: 27189-27450 bp Feature: domain Description: AbiEi_3_N Location: 27189-2745 0 bp Feature: domain Description: AbiEi_3 Location: 27462-27918 bp Feature: domain Description: AbiEi_3 Location: 27462-27918 bp Feature: gene Location: 27946-28866 bp Feature: domain Description: AbiEii Location: 27988-28729 bp Feature: domain Description: AbiEii Location: 27988-28729 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Phage_integrase (pfam00589), RVT-UG5, nitrilase (cl11424), AbiEi_3_N (pfam17194), AbiEi_3 (pfam11459), AbiEii (pfam08843)

Seq: JSNS01000096.1 (5939 bp)
Overview 1 RT 1: 2171-5937 bp Neighborhood of RT #1 [2171, 5937] DUF905 PRK13732 RVT-GII Intron_maturas2 HNHc Feature: gene Location: 2171-2404 bp Feature: domain Description: DUF905 Location: 2201-2399 bp Feature: domain Description: DUF905 Location: 2201-2399 bp Feature: gene Location: 2472-2924 bp Feature: domain Description: PRK13732 Location: 2478-2922 bp Feature: domain Description: PRK13732 Location: 2478-2922 bp Feature: gene Location: 3119-5020 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3386-4217 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3386 -4217 bp Feature: domain Description: Intron_maturas2 Location: 4331-4589 bp Feature: domain Description: Intron_maturas2 Location: 4331-4589 bp Feature: domain Description: HNHc Note: nucleases Location: 4763-4925 bp Feature: domain Description: HNHc Note: nucleases Location: 476 3-4925 bp Feature: gene Location: 5698-5937 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF905 (pfam06006), PRK13732 (single-stranded DNA-binding protein; Provisional), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507)