myRT

myRT report for GCA_000781655.1_ASM78165v1

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Seq: JSQN01000213.1 (61929 bp)
Overview 1 RT 1: 23742-28033 bp Neighborhood of RT #1 [23742, 28033] YesM RVT-GII GIIM RVT-GII Feature: gene Location: 23742-25004 bp Feature: domain Description: YesM Location: 24255-24996 bp Feature: domain Description: YesM Location: 24255-24996 bp Feature: gene Location: 25034-25204 bp Feature: gene Location: 25554-26075 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 25560-25842 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 25560-25842 bp Feature: domain Description: GIIM Note: maturase Location: 25890-26070 bp Feature: domain Description: GIIM Note: maturase Location: 25890-26070 bp Feature: gene Location: 26103-26642 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 26433-26511 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 26433-2651 1 bp Feature: gene Location: 26673-26870 bp Feature: gene Location: 27128-28033 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT YesM (COG2972), RVT-GII, GIIM (pfam08388)

Seq: JSQN01000043.1 (156289 bp)
Overview 1 RT 1: 22262-28505 bp Neighborhood of RT #1 [22262, 28642] Phage_integrase RVT-UG5 nitrilase AbiEi_3_N AbiEi_3 AbiEii Feature: gene Location: 22262-22528 bp Feature: domain Description: Phage_integrase Location: 22328-22424 bp Feature: domain Description: Phage_integrase Location: 2 2 32 8-2 2 42 4 bp Feature: gene Location: 22611-23081 bp Feature: gene Location: 23428-26637 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 23956-24445 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 2 3956-2 4445 bp Feature: domain Description: nitrilase Location: 25951-26548 bp Feature: domain Description: nitrilase Location: 2 5951-2 6548 bp Feature: gene Location: 26932-27735 bp Feature: domain Description: AbiEi_3_N Location: 26965-27226 bp Feature: domain Description: AbiEi_3_N Location: 2 6965-2 72 2 6 bp Feature: domain Description: AbiEi_3 Location: 27238-27694 bp Feature: domain Description: AbiEi_3 Location: 2 72 38-2 7694 bp Feature: gene Location: 27722-28642 bp Feature: domain Description: AbiEii Location: 27764-28505 bp Feature: domain Description: AbiEii Location: 2 7764-2 8505 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Phage_integrase (pfam00589), RVT-UG5, nitrilase (cl11424), AbiEi_3_N (pfam17194), AbiEi_3 (pfam11459), AbiEii (pfam08843)

Seq: JSQN01000163.1 (6308 bp)
Overview 1 RT 1: 2836-6162 bp Neighborhood of RT #1 [2836, 6162] HTH_XRE RVT-Retrons FRG Feature: gene Location: 2836-3228 bp Feature: gene Location: 3265-3585 bp Feature: domain Description: HTH_XRE Location: 3280-3439 bp Feature: domain Description: HTH_XRE Location: 3 280-3 43 9 bp Feature: gene Location: 3551-4501 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 3731-4274 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 3 73 1-4274 bp Feature: gene Location: 4610-5974 bp Feature: domain Description: FRG Location: 5177-5462 bp Feature: domain Description: FRG Location: 5177-5462 bp Feature: gene Location: 6013-6162 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_XRE (smart00530), RVT-Retrons, FRG (smart00901)

Seq: JSQN01000210.1 (8295 bp)
Overview 1 RT 1: 3952-6473 bp Neighborhood of RT #1 [3952, 6473] RVT-GII GIIM HNHc PRK09738 Feature: gene Location: 3952-4083 bp Feature: gene Location: 4127-4324 bp Feature: gene Location: 4621-5652 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4624-4963 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4 624 -4 963 bp Feature: domain Description: GIIM Note: maturase Location: 5014-5248 bp Feature: domain Description: GIIM Note: maturase Location: 5014 -524 8 bp Feature: domain Description: HNHc Note: nucleases Location: 5458-5617 bp Feature: domain Description: HNHc Note: nucleases Location: 54 58-5617 bp Feature: gene Location: 6047-6205 bp Feature: domain Description: PRK09738 Location: 6050-6203 bp Feature: domain Description: PRK09738 Location: 6050-6203 bp Feature: gene Location: 6285-6473 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), HNHc (smart00507), PRK09738 (small toxic polypeptide; Provisional)