myRT

myRT report for GCA_000781675.1_ASM78167v1

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Seq: JSQO01000031.1 (8239 bp)
Overview 1 RT 1: 2-2776 bp Neighborhood of RT #1 [2, 3513] RVT-GII GIIM HNHc AdoMet_MTases DUF3560 Feature: gene Location: 2-1033 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5-344 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5-344 bp Feature: domain Description: GIIM Note: maturase Location: 395-629 bp Feature: domain Description: GIIM Note: maturase Location: 395-629 bp Feature: domain Description: HNHc Note: nucleases Location: 839-998 bp Feature: domain Description: HNHc Note: nucleases Location: 839-998 bp Feature: gene Location: 1543-2106 bp Feature: domain Description: AdoMet_MTases Location: 1705-2005 bp Feature: domain Description: AdoMet_MTases Location: 1 705-2005 bp Feature: gene Location: 2152-3513 bp Feature: domain Description: DUF3560 Location: 2419-2776 bp Feature: domain Description: DUF3560 Location: 241 9-2776 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), HNHc (smart00507), AdoMet_MTases (cl17173), DUF3560 (pfam12083)

Seq: JSQO01000122.1 (43051 bp)
Overview 1 RT 1: 3-1103 bp Neighborhood of RT #1 [3, 1103] RVT_N RVT-GII Feature: gene Location: 3-641 bp Feature: domain Description: RVT_N Location: 51-288 bp Feature: domain Description: RVT_N Location: 51-2 88 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 339-642 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 339-642 bp Feature: gene Location: 678-824 bp Feature: gene Location: 921-1103 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII

Seq: JSQO01000126.1 (209944 bp)
Overview 1 RT 1: 30178-36421 bp Neighborhood of RT #1 [30178, 36558] Phage_integrase RVT-UG5 nitrilase AbiEi_3_N AbiEi_3 AbiEii Feature: gene Location: 30178-30444 bp Feature: domain Description: Phage_integrase Location: 30244-30340 bp Feature: domain Description: Phage_integrase Location: 3 0244-3 03 40 bp Feature: gene Location: 30527-30997 bp Feature: gene Location: 31344-34553 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 31872-32361 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 3 1872-3 23 61 bp Feature: domain Description: nitrilase Location: 33867-34464 bp Feature: domain Description: nitrilase Location: 3 3 867-3 4464 bp Feature: gene Location: 34848-35651 bp Feature: domain Description: AbiEi_3_N Location: 34881-35142 bp Feature: domain Description: AbiEi_3 _N Location: 3 4881-3 5142 bp Feature: domain Description: AbiEi_3 Location: 35154-35610 bp Feature: domain Description: AbiEi_3 Location: 3 5154-3 5610 bp Feature: gene Location: 35638-36558 bp Feature: domain Description: AbiEii Location: 35680-36421 bp Feature: domain Description: AbiEii Location: 3 5680-3 6421 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Phage_integrase (pfam00589), RVT-UG5, nitrilase (cl11424), AbiEi_3_N (pfam17194), AbiEi_3 (pfam11459), AbiEii (pfam08843)

Seq: JSQO01000104.1 (61929 bp)
Overview 1 RT 1: 33897-38180 bp Neighborhood of RT #1 [33897, 38188] RVT-GII RVT-GII GIIM YesM Feature: gene Location: 33897-34802 bp Feature: gene Location: 34940-35131 bp Feature: gene Location: 35288-35827 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 35618-35696 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 35618-35696 bp Feature: gene Location: 35855-36376 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 35861-36143 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 35861-3614 3 bp Feature: domain Description: GIIM Note: maturase Location: 36191-36371 bp Feature: domain Description: GIIM Note: maturase Location: 36191-36371 bp Feature: gene Location: 36698-36886 bp Feature: gene Location: 36926-38188 bp Feature: domain Description: YesM Location: 37439-38180 bp Feature: domain Description: YesM Location: 374 39-38180 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), YesM (COG2972)

Seq: JSQO01000043.1 (5972 bp)
Overview 1 RT 1: 4119-5936 bp Neighborhood of RT #1 [4119, 5971] PRK09738 RVT-GII GIIM HNHc Feature: gene Location: 4119-4307 bp Feature: gene Location: 4387-4545 bp Feature: domain Description: PRK09738 Location: 4390-4543 bp Feature: domain Description: PRK09738 Location: 4390-45 43 bp Feature: gene Location: 4940-5971 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4943-5282 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4943-5 282 bp Feature: domain Description: GIIM Note: maturase Location: 5333-5567 bp Feature: domain Description: GIIM Note: maturase Location: 5 333-5 5 67 bp Feature: domain Description: HNHc Note: nucleases Location: 5777-5936 bp Feature: domain Description: HNHc Note: nucleases Location: 5 777-5 936 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK09738 (small toxic polypeptide; Provisional), RVT-GII, GIIM (pfam08388), HNHc (smart00507)

Seq: JSQO01000095.1 (6333 bp)
Overview 1 RT 1: 2836-6162 bp Neighborhood of RT #1 [2836, 6162] HTH_XRE RVT-Retrons FRG Feature: gene Location: 2836-3228 bp Feature: gene Location: 3265-3585 bp Feature: domain Description: HTH_XRE Location: 3280-3439 bp Feature: domain Description: HTH_XRE Location: 3280-3439 bp Feature: gene Location: 3551-4501 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 3731-4274 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 3731-4274 bp Feature: gene Location: 4610-5974 bp Feature: domain Description: FRG Location: 5177-5462 bp Feature: domain Description: FRG Location: 5177-546 2 bp Feature: gene Location: 6013-6162 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_XRE (smart00530), RVT-Retrons, FRG (smart00901)