myRT

myRT report for GCA_000781695.1_ASM78169v1

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Seq: JSQP01000095.1 (7074 bp)
Overview 1 RT 1: 259-3987 bp Neighborhood of RT #1 [259, 3992] RVT-GII Intron_maturas2 HNHc PRK13732 DUF905 Feature: gene Location: 259-465 bp Feature: gene Location: 799-1008 bp Feature: gene Location: 1143-3044 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1410-2241 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 41 0-2241 bp Feature: domain Description: Intron_maturas2 Location: 2355-2613 bp Feature: domain Description: Intron_maturas2 Location: 2355-261 3 bp Feature: domain Description: HNHc Note: nucleases Location: 2787-2949 bp Feature: domain Description: HNHc Note: nucleases Location: 2787-2949 bp Feature: gene Location: 3239-3691 bp Feature: domain Description: PRK13732 Location: 3245-3689 bp Feature: domain Description: PRK1 3732 Location: 3245-3689 bp Feature: gene Location: 3759-3992 bp Feature: domain Description: DUF905 Location: 3789-3987 bp Feature: domain Description: DUF905 Location: 3789-3987 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), PRK13732 (single-stranded DNA-binding protein; Provisional), DUF905 (pfam06006)

Seq: JSQP01000010.1 (3969 bp)
Overview 1 RT 1: 837-3931 bp Neighborhood of RT #1 [837, 3931] InsE PHA02517 RVT-GII GIIM Feature: gene Location: 837-1241 bp Feature: domain Description: InsE Location: 867-1203 bp Feature: domain Description: InsE Location: 867-12 03 bp Feature: gene Location: 1270-1626 bp Feature: domain Description: PHA02517 Location: 1273-1582 bp Feature: domain Description: PHA02 517 Location: 12 73-1582 bp Feature: gene Location: 1743-3266 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2016-2748 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 016-2 748 bp Feature: domain Description: GIIM Note: maturase Location: 2823-3021 bp Feature: domain Description: GIIM Note: maturase Location: 2 82 3-302 1 bp Feature: gene Location: 3560-3931 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT InsE (COG2963), PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388)

Seq: JSQP01000060.1 (14277 bp)
Overview 1 RT 1: 8500-12373 bp Neighborhood of RT #1 [8500, 12744] SLATT_5 RVT-UG17 Caudo_TAP Macro_Appr_pase Feature: gene Location: 8500-8676 bp Feature: gene Location: 9084-9788 bp Feature: domain Description: SLATT_5 Location: 9246-9756 bp Feature: domain Description: SLATT_5 Location: 9246-9756 bp Feature: gene Location: 9766-11136 bp Feature: RT Description: RVT-UG17 Note: UG17 RT Location: 9994-10600 bp Feature: RT Description: RVT-UG17 Note: UG17 RT Location: 9994-10600 bp Feature: gene Location: 11249-11833 bp Feature: domain Description: Caudo_TAP Location: 11465-11822 bp Feature: domain Description: Caudo_TAP Location: 11465-11822 bp Feature: gene Location: 11842-12744 bp Feature: domain Description: Macro_Appr_pase Location: 11860-12373 bp Feature: domain Description: Macro_Appr_pase Location: 11860-123 73 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT SLATT_5 (pfam18160), RVT-UG17, Caudo_TAP (pfam02413), Macro_Appr_pase (cd02900)

Seq: JSQP01000110.1 (122399 bp)
Overview 1 RT 1: 53855-57796 bp Neighborhood of RT #1 [53855, 57796] RVT-Retrons Feature: gene Location: 53855-54094 bp Feature: gene Location: 54401-54577 bp Feature: gene Location: 54650-56422 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 54809-55427 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 54 809-554 27 bp Feature: gene Location: 56444-56611 bp Feature: gene Location: 56657-57796 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-Retrons