myRT

myRT report for GCA_000781915.1_ASM78191v1

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Seq: JSRA01000071.1 (4610 bp)
Overview 1 RT 1: 19-4406 bp Neighborhood of RT #1 [19, 4408] Multi_Drug_Res RVT-GII GIIM PRK13746 PRK15417 Feature: gene Location: 19-366 bp Feature: domain Description: Multi_Drug_Res Location: 28-301 bp Feature: domain Description: Multi_Drug_Res Location: 28-301 bp Feature: gene Location: 699-917 bp Feature: gene Location: 1039-2388 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1321-1939 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 321 -1 939 bp Feature: domain Description: GIIM Note: maturase Location: 1987-2191 bp Feature: domain Description: GIIM Note: maturase Location: 1 987-21 91 bp Feature: gene Location: 2477-3319 bp Feature: domain Description: PRK13746 Location: 2531-3311 bp Feature: domain Description: PRK1 3746 Location: 2531 -331 1 bp Feature: gene Location: 3395-4408 bp Feature: domain Description: PRK15417 Location: 3398-4406 bp Feature: domain Description: PRK1 541 7 Location: 3398-4406 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), Multi_Drug_Res (pfam00893), PRK15417 (integron integrase)

Seq: JSRA01000050.1 (14113 bp)
Overview 1 RT 1: 10488-14105 bp Neighborhood of RT #1 [10488, 14110] RVT-GII RVT-GII GIIM HTH_LacI PBP1_GntR Feature: gene Location: 10488-10802 bp Feature: gene Location: 11200-11397 bp Feature: gene Location: 11566-12000 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 11758-11974 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 11758-11974 bp Feature: gene Location: 11973-12626 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 11976-12384 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 11976-12 384 bp Feature: domain Description: GIIM Note: maturase Location: 12432-12624 bp Feature: domain Description: GIIM Note: maturase Location: 12 432 -12 62 4 bp Feature: gene Location: 13199-14110 bp Feature: domain Description: HTH_LacI Location: 13205-13280 bp Feature: domain Description: HTH_LacI Location: 132 05-132 80 bp Feature: domain Description: PBP1_GntR Location: 13295-14105 bp Feature: domain Description: PBP1_GntR Location: 132 95-14105 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), HTH_LacI (cd01392), PBP1_GntR (cd01575)

Seq: JSRA01000144.1 (35302 bp)
Overview 1 RT 1: 918-3430 bp Neighborhood of RT #1 [918, 3447] DUF987 CbeA_antitoxin RVT-GII GIIM CbeA_antitoxin Feature: gene Location: 918-1139 bp Feature: domain Description: DUF987 Location: 921-1113 bp Feature: domain Description: DUF987 Location: 921-1113 bp Feature: gene Location: 1150-1557 bp Feature: domain Description: CbeA_antitoxin Location: 1264-1510 bp Feature: domain Description: CbeA_antitoxin Location: 1264-1510 bp Feature: gene Location: 1594-2835 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1801-2458 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1801-2458 bp Feature: domain Description: GIIM Note: maturase Location: 2539-2761 bp Feature: domain Description: GIIM Note: maturase Location: 253 9-2761 bp Feature: gene Location: 2862-3212 bp Feature: gene Location: 3253-3447 bp Feature: domain Description: CbeA_antitoxin Location: 3373-3430 bp Feature: domain Description: CbeA_antitoxin Location: 3 3 73 -3 43 0 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT CbeA_antitoxin (pfam06154), RVT-GII, GIIM (pfam08388), DUF987 (pfam06174)

Seq: JSRA01000115.1 (25641 bp)
Overview 1 RT 1: 575-5776 bp Neighborhood of RT #1 [575, 5784] STALD RVT-GII GIIM Ogr_Delta HOK_GEF Feature: gene Location: 575-1225 bp Feature: domain Description: STALD Location: 650-1154 bp Feature: domain Description: STALD Location: 650-1154 bp Feature: gene Location: 1896-2333 bp Feature: gene Location: 2627-4150 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2900-3632 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2900-3632 bp Feature: domain Description: GIIM Note: maturase Location: 3707-3905 bp Feature: domain Description: GIIM Note: maturase Location: 3707-3905 bp Feature: gene Location: 5192-5452 bp Feature: domain Description: Ogr_Delta Location: 5201-5342 bp Feature: domain Description: Ogr_Delta Location: 5201-534 2 bp Feature: gene Location: 5644-5784 bp Feature: domain Description: HOK_GEF Location: 5671-5776 bp Feature: domain Description: HOK_GEF Location: 5671-5776 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), Ogr_Delta (pfam04606), HOK_GEF (pfam01848), STALD (pfam18185)