myRT

myRT report for GCA_000781965.1_ASM78196v1

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Seq: JSRE01000049.1 (15827 bp)
Overview 1 RT 1: 7478-15798 bp Neighborhood of RT #1 [7478, 15824] RVT-GII DDE_Tnp_IS66 HTH_23 InsE RVT-GII RVT-GII FHA_bHelix fil_hemag_20aa FHA_bHelix FHA_bHelix Feature: gene Location: 7478-7753 bp Feature: gene Location: 7949-8110 bp Feature: gene Location: 8192-8902 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8393-8894 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8393-8894 bp Feature: gene Location: 8897-9316 bp Feature: gene Location: 9354-9743 bp Feature: domain Description: DDE_Tnp_IS66 Location: 9459-9702 bp Feature: domain Description: DDE_Tnp_IS66 Location: 9459-9702 bp Feature: gene Location: 11162-11812 bp Feature: domain Description: HTH_23 Location: 11213-11312 bp Feature: domain Description: HTH_23 Location: 1 1 21 3-1 1 31 2 bp Feature: domain Description: InsE Location: 11438-11789 bp Feature: domain Description: InsE Location: 1 1 438-1 1 789 bp Feature: gene Location: 12184-12387 bp Feature: gene Location: 12794-13168 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 12800-12971 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 2800-1 2971 bp Feature: gene Location: 13184-13996 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 13457-13913 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 3457-1 391 3 bp Feature: gene Location: 14117-14320 bp Feature: gene Location: 14607-15824 bp Feature: domain Description: FHA_bHelix Location: 14637-14868 bp Feature: domain Description: FHA_bHelix Location: 1 4637-1 4868 bp Feature: domain Description: fil_hemag_20aa Location: 14868-14928 bp Feature: domain Description: fil_hemag_20aa Location: 1 4868-1 4928 bp Feature: domain Description: FHA_bHelix Location: 15102-15471 bp Feature: domain Description: FHA_bHelix Location: 1 51 02-1 5471 bp Feature: domain Description: FHA_bHelix Location: 15687-15798 bp Feature: domain Description: FHA_bHelix Location: 1 5687-1 5798 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, DDE_Tnp_IS66 (pfam03050), HTH_23 (pfam13384), InsE (COG2963), FHA_bHelix (sd00046), fil_hemag_20aa (TIGR01731)

Seq: JSRE01000038.1 (37357 bp)
Overview 1 RT 1: 14820-18924 bp Neighborhood of RT #1 [14820, 18938] InsG Transposase_20 RVT-GII GIIM rve_2 Feature: gene Location: 14820-14972 bp Feature: gene Location: 14999-16390 bp Feature: domain Description: InsG Location: 15002-15923 bp Feature: domain Description: InsG Location: 15002 -1592 3 bp Feature: domain Description: Transposase_20 Location: 16046-16292 bp Feature: domain Description: Transposase_2 0 Location: 16046-162 92 bp Feature: gene Location: 16777-18165 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 17107-17725 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 17107-1772 5 bp Feature: domain Description: GIIM Note: maturase Location: 17773-18004 bp Feature: domain Description: GIIM Note: maturase Location: 17773-18004 bp Feature: gene Location: 18393-18710 bp Feature: gene Location: 18786-18938 bp Feature: domain Description: rve_2 Location: 18816-18924 bp Feature: domain Description: rve_2 Location: 18816-1892 4 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT InsG (COG3385), Transposase_20 (pfam02371), RVT-GII, GIIM (pfam08388), rve_2 (pfam13333)

Seq: JSRE01000013.1 (11818 bp)
Overview 1 RT 1: 5435-8465 bp Neighborhood of RT #1 [5435, 8515] RVT-GII COG3547 COG3547 Feature: gene Location: 5435-5635 bp Feature: gene Location: 5643-5783 bp Feature: gene Location: 5817-7274 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6225-6912 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6225-6912 bp Feature: gene Location: 7513-7908 bp Feature: domain Description: COG3547 Location: 7531-7822 bp Feature: domain Description: COG3 547 Location: 753 1-7822 bp Feature: gene Location: 7967-8515 bp Feature: domain Description: COG3547 Location: 7979-8465 bp Feature: domain Description: COG3 547 Location: 7979-8465 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, COG3547 (Transposase )