myRT

myRT report for GCA_000781995.1_ASM78199v1

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Seq: JSRD01000008.1 (37359 bp)
Overview 1 RT 1: 18422-22537 bp Neighborhood of RT #1 [18422, 22537] rve_2 RVT-GII GIIM InsG Transposase_20 Feature: gene Location: 18422-18574 bp Feature: domain Description: rve_2 Location: 18452-18560 bp Feature: domain Description: rve_2 Location: 1 8452-1 8560 bp Feature: gene Location: 18847-19152 bp Feature: gene Location: 19195-20583 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 19525-20143 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 9525-201 43 bp Feature: domain Description: GIIM Note: maturase Location: 20191-20422 bp Feature: domain Description: GIIM Note: maturase Location: 201 91 -20422 bp Feature: gene Location: 20970-22361 bp Feature: domain Description: InsG Location: 20973-21894 bp Feature: domain Description: InsG Location: 20973-21 894 bp Feature: domain Description: Transposase_20 Location: 22017-22263 bp Feature: domain Description: Transposase_20 Location: 2201 7-22263 bp Feature: gene Location: 22370-22537 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT rve_2 (pfam13333), RVT-GII, GIIM (pfam08388), InsG (COG3385), Transposase_20 (pfam02371)

Seq: JSRD01000057.1 (15829 bp)
Overview 1 RT 1: 7480-15797 bp Neighborhood of RT #1 [7480, 15826] RVT-GII DDE_Tnp_IS66 HTH_23 InsE RVT-GII RVT-GII FHA_bHelix fil_hemag_20aa FHA_bHelix FHA_bHelix Feature: gene Location: 7480-7755 bp Feature: gene Location: 7951-8112 bp Feature: gene Location: 8194-8904 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8395-8896 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8395-8896 bp Feature: gene Location: 8899-9318 bp Feature: gene Location: 9356-9745 bp Feature: domain Description: DDE_Tnp_IS66 Location: 9461-9704 bp Feature: domain Description: DDE_Tnp_IS66 Location: 9461-9704 bp Feature: gene Location: 11164-11814 bp Feature: domain Description: HTH_23 Location: 11215-11314 bp Feature: domain Description: HTH_2 3 Location: 112 15-11314 bp Feature: domain Description: InsE Location: 11440-11791 bp Feature: domain Description: InsE Location: 11440-11791 bp Feature: gene Location: 12186-12389 bp Feature: gene Location: 12796-13170 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 12802-12973 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 12 802 -12 973 bp Feature: gene Location: 13186-13998 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 13459-13915 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 13459-13915 bp Feature: gene Location: 14119-14322 bp Feature: gene Location: 14609-15826 bp Feature: domain Description: FHA_bHelix Location: 14639-14858 bp Feature: domain Description: FHA_bHelix Location: 14639-14858 bp Feature: domain Description: fil_hemag_20aa Location: 14870-14930 bp Feature: domain Description: fil_hemag_2 0aa Location: 14870-14930 bp Feature: domain Description: FHA_bHelix Location: 15068-15470 bp Feature: domain Description: FHA_bHelix Location: 15068-15470 bp Feature: domain Description: FHA_bHelix Location: 15689-15797 bp Feature: domain Description: FHA_bHelix Location: 15689-15797 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, DDE_Tnp_IS66 (pfam03050), HTH_23 (pfam13384), InsE (COG2963), FHA_bHelix (sd00046), fil_hemag_20aa (TIGR01731)

Seq: JSRD01000046.1 (13852 bp)
Overview 1 RT 1: 5338-8418 bp Neighborhood of RT #1 [5338, 8418] COG3547 COG3547 RVT-GII Feature: gene Location: 5338-5886 bp Feature: domain Description: COG3547 Location: 5350-5836 bp Feature: domain Description: COG3 547 Location: 53 50-583 6 bp Feature: gene Location: 5945-6340 bp Feature: domain Description: COG3547 Location: 5963-6254 bp Feature: domain Description: COG3 547 Location: 5963 -6254 bp Feature: gene Location: 6579-8036 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6987-7674 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6987-7674 bp Feature: gene Location: 8070-8210 bp Feature: gene Location: 8218-8418 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3547 (Transposase ), RVT-GII