myRT

myRT report for GCA_000782195.1_ASM78219v1

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Seq: JSRO01000018.1 (14277 bp)
Overview 1 RT 1: 8500-12373 bp Neighborhood of RT #1 [8500, 12744] SLATT_5 RVT-UG17 Caudo_TAP Macro_Appr_pase Feature: gene Location: 8500-8676 bp Feature: gene Location: 9084-9788 bp Feature: domain Description: SLATT_5 Location: 9246-9756 bp Feature: domain Description: SLATT_5 Location: 9246-9756 bp Feature: gene Location: 9766-11136 bp Feature: RT Description: RVT-UG17 Note: UG17 RT Location: 9994-10600 bp Feature: RT Description: RVT-UG1 7 Note: UG1 7 RT Location: 9994-1 0600 bp Feature: gene Location: 11249-11833 bp Feature: domain Description: Caudo_TAP Location: 11465-11822 bp Feature: domain Description: Caudo_TAP Location: 1 1 465-1 1 822 bp Feature: gene Location: 11842-12744 bp Feature: domain Description: Macro_Appr_pase Location: 11860-12373 bp Feature: domain Description: Macro_Appr_pase Location: 1 1 860-1 2373 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT SLATT_5 (pfam18160), RVT-UG17, Caudo_TAP (pfam02413), Macro_Appr_pase (cd02900)

Seq: JSRO01000040.1 (6812 bp)
Overview 1 RT 1: 3083-6810 bp Neighborhood of RT #1 [3083, 6810] DUF905 PRK13732 RVT-GII Intron_maturas2 HNHc Feature: gene Location: 3083-3316 bp Feature: domain Description: DUF905 Location: 3113-3311 bp Feature: domain Description: DUF905 Location: 3113-3311 bp Feature: gene Location: 3384-3836 bp Feature: domain Description: PRK13732 Location: 3390-3834 bp Feature: domain Description: PRK13732 Location: 3390-3834 bp Feature: gene Location: 4031-5932 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4298-5129 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 42 98-512 9 bp Feature: domain Description: Intron_maturas2 Location: 5243-5501 bp Feature: domain Description: Intron_maturas2 Location: 52 43-5501 bp Feature: domain Description: HNHc Note: nucleases Location: 5675-5837 bp Feature: domain Description: HNHc Note: nucleases Location: 5675-5837 bp Feature: gene Location: 6610-6810 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF905 (pfam06006), PRK13732 (single-stranded DNA-binding protein; Provisional), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507)

Seq: JSRO01000109.1 (123674 bp)
Overview 1 RT 1: 55130-59071 bp Neighborhood of RT #1 [55130, 59071] RVT-Retrons Feature: gene Location: 55130-55369 bp Feature: gene Location: 55676-55852 bp Feature: gene Location: 55925-57697 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 56084-56702 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 56084-56702 bp Feature: gene Location: 57719-57886 bp Feature: gene Location: 57932-59071 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-Retrons

Seq: JSRO01000097.1 (25697 bp)
Overview 1 RT 1: 10339-14828 bp Neighborhood of RT #1 [10339, 14893] IS5 autotrans_barl RVT-GII GIIM PHA02517 Feature: gene Location: 10339-11058 bp Feature: domain Description: IS5 Location: 10528-10936 bp Feature: domain Description: IS5 Location: 10528-10936 bp Feature: gene Location: 11112-11729 bp Feature: domain Description: autotrans_barl Location: 11235-11676 bp Feature: domain Description: autotrans_barl Location: 11235-11676 bp Feature: gene Location: 12248-13771 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 12521-13253 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 12521-13253 bp Feature: domain Description: GIIM Note: maturase Location: 13328-13526 bp Feature: domain Description: GIIM Note: maturase Location: 13328-13526 bp Feature: gene Location: 13725-14150 bp Feature: gene Location: 14363-14893 bp Feature: domain Description: PHA02517 Location: 14477-14828 bp Feature: domain Description: PHA02517 Location: 14 4 77-14 828 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT IS5 (COG3039), autotrans_barl (TIGR01414), RVT-GII, GIIM (pfam08388), PHA02517 (putative transposase OrfB; Reviewed)