myRT

myRT report for GCA_000782715.1_ASM78271v1

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Seq: JSSO01000126.1 (14964 bp)
Overview 1 RT 1: 1-4489 bp Neighborhood of RT #1 [1, 4611] PHA02517 RVT-GII GIIM autotrans_barl IS5 Feature: gene Location: 1-420 bp Feature: domain Description: PHA02517 Location: 4-355 bp Feature: domain Description: PHA0251 7 Location: 4-355 bp Feature: gene Location: 1012-2535 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1285-2017 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 285-201 7 bp Feature: domain Description: GIIM Note: maturase Location: 2092-2290 bp Feature: domain Description: GIIM Note: maturase Location: 2092-2290 bp Feature: gene Location: 3221-3838 bp Feature: domain Description: autotrans_barl Location: 3344-3785 bp Feature: domain Description: autotrans_barl Location: 3344-3785 bp Feature: gene Location: 3892-4611 bp Feature: domain Description: IS5 Location: 4081-4489 bp Feature: domain Description: IS5 Location: 4081 -4489 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388), autotrans_barl (TIGR01414), IS5 (COG3039)

Seq: JSSO01000059.1 (123194 bp)
Overview 1 RT 1: 53561-57502 bp Neighborhood of RT #1 [53561, 57502] RVT-Retrons Feature: gene Location: 53561-53800 bp Feature: gene Location: 54107-54283 bp Feature: gene Location: 54356-56128 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 54515-55133 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 54515-55133 bp Feature: gene Location: 56150-56317 bp Feature: gene Location: 56363-57502 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-Retrons

Seq: JSSO01000066.1 (6886 bp)
Overview 1 RT 1: 3083-5837 bp Neighborhood of RT #1 [3083, 5932] DUF905 PRK13732 RVT-GII Intron_maturas2 HNHc Feature: gene Location: 3083-3316 bp Feature: domain Description: DUF905 Location: 3113-3311 bp Feature: domain Description: DUF905 Location: 3 113 -3 3 11 bp Feature: gene Location: 3384-3836 bp Feature: domain Description: PRK13732 Location: 3390-3834 bp Feature: domain Description: PRK13 73 2 Location: 3 3 90-3 83 4 bp Feature: gene Location: 4031-5932 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4298-5129 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4298-5129 bp Feature: domain Description: Intron_maturas2 Location: 5243-5501 bp Feature: domain Description: Intron_maturas2 Location: 5243 -5501 bp Feature: domain Description: HNHc Note: nucleases Location: 5675-5837 bp Feature: domain Description: HNHc Note: nucleases Location: 5675-583 7 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF905 (pfam06006), PRK13732 (single-stranded DNA-binding protein; Provisional), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507)

Seq: JSSO01000076.1 (14312 bp)
Overview 1 RT 1: 1569-5813 bp Neighborhood of RT #1 [1569, 5813] Macro_Appr_pase Caudo_TAP RVT-UG17 SLATT_5 Feature: gene Location: 1569-2471 bp Feature: domain Description: Macro_Appr_pase Location: 1587-2100 bp Feature: domain Description: Macro_Appr_pase Location: 1587-2100 bp Feature: gene Location: 2480-3064 bp Feature: domain Description: Caudo_TAP Location: 2696-3053 bp Feature: domain Description: Caudo_TAP Location: 2696-3053 bp Feature: gene Location: 3177-4547 bp Feature: RT Description: RVT-UG17 Note: UG17 RT Location: 3405-4011 bp Feature: RT Description: RVT-UG17 Note: UG17 RT Location: 34 05-4 011 bp Feature: gene Location: 4525-5229 bp Feature: domain Description: SLATT_5 Location: 4687-5197 bp Feature: domain Description: SLATT_5 Location: 4 687-5197 bp Feature: gene Location: 5637-5813 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Macro_Appr_pase (cd02900), Caudo_TAP (pfam02413), RVT-UG17, SLATT_5 (pfam18160)