myRT

myRT report for GCA_000785145.2_ASM78514v2

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Seq: JSZA02000062.1 Candidatus Thiomargarita nelsonii isolate Hydrate Ridge NODE_245_length_39110_cov_143.757_ID_489, whole genome shotgun sequence (39110 bp)
Overview 1 RT 1: 10599-15973 bp Neighborhood of RT #1 [10599, 16050] NapB GIIM HNHc RVT_N RVT-GII napG Feature: gene Location: 10599-11051 bp Ori: TGO02903.1 Feature: domain Description: NapB Location: 10689-11031 bp Feature: domain Description: NapB Location: 1 0689-1 1 031 bp Feature: gene Location: 12466-13503 bp Ori: KHD08322.1 Feature: domain Description: GIIM Note: maturase Location: 12490-12724 bp Feature: domain Description: GIIM Note: maturase Location: 1 2490-1 2724 bp Feature: domain Description: HNHc Note: nucleases Location: 12940-13102 bp Feature: domain Description: HNHc Note: nucleases Location: 1 2940-1 31 02 bp Feature: gene Location: 13872-14444 bp Ori: KHD08329.1 Feature: domain Description: RVT_N Location: 13890-14130 bp Feature: domain Description: RVT_N Location: 1 3890-1 41 30 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 14199-14433 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 41 99-1 4433 bp Feature: gene Location: 14797-15090 bp Feature: gene Location: 15286-16050 bp Ori: KHD08324.1 Feature: domain Description: napG Location: 15298-15973 bp Feature: domain Description: napG Location: 1 5298-1 5973 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT NapB (pfam03892), GIIM (pfam08388), HNHc (smart00507), RVT_N (pfam13655), RVT-GII, napG (PRK09476)

Seq: JSZA02000002.1 Candidatus Thiomargarita nelsonii isolate Hydrate Ridge NODE_70_length_96389_cov_97.7531_ID_139, whole genome shotgun sequence (96385 bp)
Overview 1 RT 1: 61662-65405 bp Neighborhood of RT #1 [61662, 65440] RVT_N RVT-GII GIIM trio_amidotrans CheW Feature: gene Location: 61662-63002 bp Ori: KHD06885.1 Feature: domain Description: RVT_N Location: 61668-61815 bp Feature: domain Description: RVT_N Location: 61668-61815 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 61911-62523 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 61911-62 52 3 bp Feature: domain Description: GIIM Note: maturase Location: 62634-62868 bp Feature: domain Description: GIIM Note: maturase Location: 62 634-62 868 bp Feature: gene Location: 63193-64953 bp Ori: KHD06884.1 Feature: domain Description: trio_amidotrans Location: 63196-64945 bp Feature: domain Description: trio_amidotrans Location: 63196-64945 bp Feature: gene Location: 64955-65440 bp Ori: KHD06883.1 Feature: domain Description: CheW Location: 65042-65405 bp Feature: domain Description: CheW Location: 65042 -65405 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), trio_amidotrans (TIGR03104), CheW (smart00260)

Seq: JSZA02000248.1 Candidatus Thiomargarita nelsonii isolate Hydrate Ridge NODE_645_length_6671_cov_99.8514_ID_1289, whole genome shotgun sequence (6671 bp)
Overview 1 RT 1: 1-5474 bp Neighborhood of RT #1 [1, 5474] RVT_N RVT_N RVT-GII RVT-GII GIIM HNHc Feature: gene Location: 1-233 bp Feature: gene Location: 398-745 bp Ori: TGO02041.1 Feature: domain Description: RVT_N Location: 572-707 bp Feature: domain Description: RVT_N Location: 572-707 bp Feature: gene Location: 736-1248 bp Ori: TGO02042.1 Feature: domain Description: RVT_N Location: 748-856 bp Feature: domain Description: RVT_N Location: 748-856 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 922-1195 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 922-1195 bp Feature: gene Location: 1275-2735 bp Ori: TGO02043.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1278-1782 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1278-1782 bp Feature: domain Description: GIIM Note: maturase Location: 1917-2148 bp Feature: domain Description: GIIM Note: maturase Location: 1917-2148 bp Feature: domain Description: HNHc Note: nucleases Location: 2364-2526 bp Feature: domain Description: HNHc Note: nucleases Location: 23 64-2526 bp Feature: gene Location: 3306-4463 bp Feature: gene Location: 4704-5474 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507)

Seq: JSZA02000137.1 Candidatus Thiomargarita nelsonii isolate Hydrate Ridge NODE_467_length_17524_cov_94.692_ID_933, whole genome shotgun sequence (17524 bp)
Overview 1 RT 1: 12508-16231 bp Neighborhood of RT #1 [12508, 16284] PulG PRK11360 RVT_N RVT-GII Feature: gene Location: 12508-13119 bp Ori: KHD07897.1 Feature: domain Description: PulG Location: 12511-12721 bp Feature: domain Description: PulG Location: 12511-12721 bp Feature: gene Location: 13125-14870 bp Ori: KHD07898.1 Feature: domain Description: PRK11360 Location: 14187-14733 bp Feature: domain Description: PRK11360 Location: 14 187-14 733 bp Feature: gene Location: 15619-16284 bp Ori: TGO02430.1 Feature: domain Description: RVT_N Location: 15664-15892 bp Feature: domain Description: RVT_N Location: 15664 -15892 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 15958-16231 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 15958-16231 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PulG (pfam11773), PRK11360 (two-component system sensor histidine kinase AtoS), RVT_N (pfam13655), RVT-GII

Seq: JSZA02000283.1 Candidatus Thiomargarita nelsonii isolate Hydrate Ridge NODE_714_length_4594_cov_110.748_ID_1427, whole genome shotgun sequence (4594 bp)
Overview 1 RT 1: 2149-4179 bp Neighborhood of RT #1 [2149, 4232] RVT-GII GIIM HNHc RVT_N RVT-GII Feature: gene Location: 2149-3552 bp Ori: TGN99881.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2152-2539 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 215 2-25 39 bp Feature: domain Description: GIIM Note: maturase Location: 2671-2902 bp Feature: domain Description: GIIM Note: maturase Location: 2671-2902 bp Feature: domain Description: HNHc Note: nucleases Location: 3118-3280 bp Feature: domain Description: HNHc Note: nucleases Location: 3118-3280 bp Feature: gene Location: 3579-4232 bp Ori: TGN99882.1 Feature: domain Description: RVT_N Location: 3597-3840 bp Feature: domain Description: RVT_N Location: 35 97-3840 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3906-4179 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3906-4179 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), HNHc (smart00507), RVT_N (pfam13655)

Seq: JSZA02000162.1 Candidatus Thiomargarita nelsonii isolate Hydrate Ridge NODE_508_length_14947_cov_102.393_ID_1015, whole genome shotgun sequence (14947 bp)
Overview 1 RT 1: 119-3014 bp Neighborhood of RT #1 [119, 3016] RVT-GII GIIM HNHc sulf_tusB_dsrH dsrC_tusE_dsvC Feature: gene Location: 119-1990 bp Ori: TGO02317.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 203-992 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 203-992 bp Feature: domain Description: GIIM Note: maturase Location: 1130-1355 bp Feature: domain Description: GIIM Note: maturase Location: 1130-1355 bp Feature: domain Description: HNHc Note: nucleases Location: 1571-1733 bp Feature: domain Description: HNHc Note: nucleases Location: 1571-1733 bp Feature: gene Location: 2331-2636 bp Ori: KHD09899.1 Feature: domain Description: sulf_tusB_dsrH Location: 2343-2631 bp Feature: domain Description: sulf_tusB_dsrH Location: 2343-26 31 bp Feature: gene Location: 2684-3016 bp Ori: KHD09898.1 Feature: domain Description: dsrC_tusE_dsvC Location: 2693-3014 bp Feature: domain Description: dsrC_tusE_dsvC Location: 26 93-3014 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), HNHc (smart00507), sulf_tusB_dsrH (TIGR03011), dsrC_tusE_dsvC (TIGR03342)

Seq: JSZA02000046.1 Candidatus Thiomargarita nelsonii isolate Hydrate Ridge NODE_202_length_45218_cov_143.318_ID_403, whole genome shotgun sequence (45218 bp)
Overview 1 RT 1: 36539-41238 bp Neighborhood of RT #1 [36539, 41238] TauC RVT-GII GIIM HNHc RVT-GII RVT_N Feature: gene Location: 36539-36736 bp Feature: gene Location: 36733-37515 bp Ori: KHD06676.1 Feature: domain Description: TauC Location: 36787-37510 bp Feature: domain Description: TauC Location: 367 87 -37 510 bp Feature: gene Location: 38997-40358 bp Ori: TGO03048.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 39003-39432 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 39003-39432 bp Feature: domain Description: GIIM Note: maturase Location: 39564-39795 bp Feature: domain Description: GIIM Note: maturase Location: 39564-397 95 bp Feature: domain Description: HNHc Note: nucleases Location: 40011-40173 bp Feature: domain Description: HNHc Note: nucleases Location: 40011-4017 3 bp Feature: gene Location: 40358-40627 bp Ori: TGO03049.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 40361-40574 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 40361-4057 4 bp Feature: gene Location: 40654-40914 bp Ori: TGO03050.1 Feature: domain Description: RVT_N Location: 40666-40774 bp Feature: domain Description: RVT_N Location: 40666-407 7 4 bp Feature: gene Location: 41017-41238 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT TauC (COG0600), RVT-GII, GIIM (pfam08388), HNHc (smart00507), RVT_N (pfam13655)

Seq: JSZA02000083.1 Candidatus Thiomargarita nelsonii isolate Hydrate Ridge NODE_300_length_32195_cov_136.74_ID_599, whole genome shotgun sequence (32195 bp)
Overview 1 RT 1: 21409-32063 bp Neighborhood of RT #1 [21409, 32104] hisE RVT-GII GIIM HNHc RVT_N YpjD RVT-GII Intron_maturas2 HNHc truA Feature: gene Location: 21409-21735 bp Ori: KHD03617.2 Feature: domain Description: hisE Location: 21415-21721 bp Feature: domain Description: hisE Location: 21415-21721 bp Feature: gene Location: 22182-22412 bp Feature: gene Location: 22412-23926 bp Ori: TGO02744.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 22415-23210 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 22415-23210 bp Feature: domain Description: GIIM Note: maturase Location: 23345-23576 bp Feature: domain Description: GIIM Note: maturase Location: 23345-23576 bp Feature: domain Description: HNHc Note: nucleases Location: 23792-23903 bp Feature: domain Description: HNHc Note: nucleases Location: 23792-23903 bp Feature: gene Location: 24014-24442 bp Ori: TGO02745.1 Feature: domain Description: RVT_N Location: 24119-24410 bp Feature: domain Description: RVT_N Location: 24119-24410 bp Feature: gene Location: 25549-26529 bp Feature: gene Location: 26610-27689 bp Feature: gene Location: 27756-28529 bp Ori: KHD04734.1 Feature: domain Description: YpjD Location: 27780-28527 bp Feature: domain Description: YpjD Location: 2778 0-28 527 bp Feature: gene Location: 28725-30569 bp Ori: KHD04731.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 29004-29823 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 29004-298 23 bp Feature: domain Description: Intron_maturas2 Location: 29916-30207 bp Feature: domain Description: Intron_maturas2 Location: 29916-30207 bp Feature: domain Description: HNHc Note: nucleases Location: 30339-30504 bp Feature: domain Description: HNHc Note: nucleases Location: 30339-30504 bp Feature: gene Location: 31334-32104 bp Ori: TGO02746.1 Feature: domain Description: truA Location: 31337-32063 bp Feature: domain Description: truA Location: 31337-32063 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT hisE (PRK00400), RVT-GII, GIIM (pfam08388), HNHc (smart00507), RVT_N (pfam13655), YpjD (COG4137), Intron_maturas2 (pfam01348), truA (PRK00021)

Seq: JSZA02000100.1 Candidatus Thiomargarita nelsonii isolate Hydrate Ridge NODE_374_length_23561_cov_136.275_ID_747, whole genome shotgun sequence (23561 bp)
Overview 1 RT 1: 5034-6652 bp 2 RT 2: 19863-23387 bp Neighborhood of RT #1 [5034, 6750] RVT-GII GIIM Neighborhood of RT #2 [19863, 23506] PRK14836 frr RVT_N RVT-GII GIIM HNHc Feature: gene Location: 5034-5309 bp Feature: gene Location: 5845-6750 bp Ori: KHD09931.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5866-6289 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5866-6289 bp Feature: domain Description: GIIM Note: maturase Location: 6436-6652 bp Feature: domain Description: GIIM Note: maturase Location: 6436-6652 bp Feature: gene Location: 19863-20585 bp Ori: KHD06534.1 Feature: domain Description: PRK14836 Location: 19875-20580 bp Feature: domain Description: PRK14836 Location: 19 875-20580 bp Feature: gene Location: 20625-21146 bp Ori: KHD06533.2 Feature: domain Description: frr Location: 20628-21144 bp Feature: domain Description: frr Location: 20628-21144 bp Feature: gene Location: 21617-23506 bp Ori: TGO02616.1 Feature: domain Description: RVT_N Location: 21635-21872 bp Feature: domain Description: RVT_N Location: 21635-21872 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 21944-22646 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 219 44-22646 bp Feature: domain Description: GIIM Note: maturase Location: 22778-23009 bp Feature: domain Description: GIIM Note: maturase Location: 22778-23009 bp Feature: domain Description: HNHc Note: nucleases Location: 23222-23387 bp Feature: domain Description: HNHc Note: nucleases Location: 23222-23387 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), PRK14836 (undecaprenyl pyrophosphate synthase; Provisional), frr (TIGR00496), RVT_N (pfam13655), HNHc (smart00507)

Seq: JSZA02000211.1 Candidatus Thiomargarita nelsonii isolate Hydrate Ridge NODE_572_length_10005_cov_100.094_ID_1143, whole genome shotgun sequence (10005 bp)
Overview 1 RT 1: 6483-9766 bp Neighborhood of RT #1 [6483, 9777] DsrC PRK00120 RVT-GII GIIM HNHc RVT_N RVT-GII Feature: gene Location: 6483-6827 bp Ori: KHD06643.1 Feature: domain Description: DsrC Location: 6495-6804 bp Feature: domain Description: DsrC Location: 6495-6804 bp Feature: gene Location: 6885-7478 bp Ori: KHD06642.1 Feature: domain Description: PRK00120 Location: 6894-7467 bp Feature: domain Description: PRK00120 Location: 6894-7467 bp Feature: gene Location: 7719-9143 bp Ori: TGO02138.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7725-8109 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7725-810 9 bp Feature: domain Description: GIIM Note: maturase Location: 8241-8472 bp Feature: domain Description: GIIM Note: maturase Location: 8241-8472 bp Feature: domain Description: HNHc Note: nucleases Location: 8688-8850 bp Feature: domain Description: HNHc Note: nucleases Location: 8688-8850 bp Feature: gene Location: 9130-9777 bp Ori: TGO02139.1 Feature: domain Description: RVT_N Location: 9148-9391 bp Feature: domain Description: RVT_N Location: 9148-9391 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9457-9766 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9457-9766 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DsrC (pfam04358), PRK00120 (dITP/XTP pyrophosphatase; Reviewed), RVT-GII, GIIM (pfam08388), HNHc (smart00507), RVT_N (pfam13655)

Seq: JSZA02000007.1 Candidatus Thiomargarita nelsonii isolate Hydrate Ridge New_contig_1, whole genome shotgun sequence (64900 bp)
Overview 1 RT 1: 5983-14997 bp 2 RT 2: 60641-64897 bp Neighborhood of RT #1 [5983, 15002] CDP_TE_SDR_e RVT_N RVT-GII GIIM HNHc GumC eps_transp_fam rluD Neighborhood of RT #2 [60641, 64900] ParM_like rplE RVT_N RVT-GII Feature: gene Location: 5983-6495 bp Feature: gene Location: 6485-7540 bp Ori: KHD08611.1 Feature: domain Description: CDP_TE_SDR_e Location: 6491-7514 bp Feature: domain Description: CDP_TE_SDR_e Location: 6491-7514 bp Feature: gene Location: 8436-10298 bp Ori: TGO03644.1 Feature: domain Description: RVT_N Location: 8472-8715 bp Feature: domain Description: RVT_N Location: 8472-8715 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8781-9483 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8781-9483 bp Feature: domain Description: GIIM Note: maturase Location: 9612-9846 bp Feature: domain Description: GIIM Note: maturase Location: 9612-9846 bp Feature: domain Description: HNHc Note: nucleases Location: 10059-10212 bp Feature: domain Description: HNHc Note: nucleases Location: 10059-10212 bp Feature: gene Location: 11556-13793 bp Ori: KHD08617.1 Feature: domain Description: GumC Location: 11595-12990 bp Feature: domain Description: GumC Location: 11 595-12990 bp Feature: domain Description: eps_transp_fam Location: 13095-13782 bp Feature: domain Description: eps_transp_fam Location: 13095-13782 bp Feature: gene Location: 14043-15002 bp Ori: KHD08610.1 Feature: domain Description: rluD Location: 14061-14997 bp Feature: domain Description: rluD Location: 14061-14997 bp Feature: gene Location: 60641-61945 bp Ori: KHD05795.1 Feature: domain Description: ParM_like Location: 60698-61841 bp Feature: domain Description: ParM_like Location: 60698-61841 bp Feature: gene Location: 63127-63627 bp Ori: KHD05794.1 Feature: domain Description: rplE Location: 63130-63604 bp Feature: domain Description: rplE Location: 63130-63604 bp Feature: gene Location: 64228-64900 bp Ori: TGO03646.1 Feature: domain Description: RVT_N Location: 64273-64501 bp Feature: domain Description: RVT_N Location: 64273-64501 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 64567-64897 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 64567-64897 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT CDP_TE_SDR_e (cd05258), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507), GumC (COG3206), eps_transp_fam (TIGR01005), rluD (PRK11180), ParM_like (cd10227), rplE (PRK00010)

Seq: JSZA02000318.1 Candidatus Thiomargarita nelsonii isolate Hydrate Ridge NODE_807_length_3106_cov_100.49_ID_1613, whole genome shotgun sequence (3106 bp)
Overview 1 RT 1: 431-1601 bp Neighborhood of RT #1 [431, 1873] RVT-GII GIIM HNHc Feature: gene Location: 431-1873 bp Ori: TGN99842.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 437-860 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 437-860 bp Feature: domain Description: GIIM Note: maturase Location: 992-1223 bp Feature: domain Description: GIIM Note: maturase Location: 992-12 23 bp Feature: domain Description: HNHc Note: nucleases Location: 1433-1601 bp Feature: domain Description: HNHc Note: nucleases Location: 1433-1601 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), HNHc (smart00507)

Seq: JSZA02000333.1 Candidatus Thiomargarita nelsonii isolate Hydrate Ridge NODE_854_length_2580_cov_118.469_ID_1707, whole genome shotgun sequence (2580 bp)
Overview 1 RT 1: 171-2485 bp Neighborhood of RT #1 [171, 2538] TOPRIM_OLD RVT_N RVT-GII Feature: gene Location: 171-392 bp Ori: TGN99818.1 Feature: domain Description: TOPRIM_OLD Location: 243-336 bp Feature: domain Description: TOPRIM_OLD Location: 243-336 bp Feature: gene Location: 1774-2538 bp Ori: TGN99819.1 Feature: domain Description: RVT_N Location: 1873-2146 bp Feature: domain Description: RVT_N Location: 1873-2146 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2212-2485 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2212-2485 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT TOPRIM_OLD (cd01026), RVT_N (pfam13655), RVT-GII

Seq: JSZA02000003.1 Candidatus Thiomargarita nelsonii isolate Hydrate Ridge NODE_71_length_96153_cov_106.105_ID_141, whole genome shotgun sequence (96152 bp)
Overview 1 RT 1: 68391-74362 bp Neighborhood of RT #1 [68391, 74526] sulf_tusD_dsrE sulf_tusC_dsrF RVT-GII RVT-GII GIIM HNHc AAA_35 PDDEXK_3 AAA15 Feature: gene Location: 68391-68783 bp Ori: TGO03719.1 Feature: domain Description: sulf_tusD_dsrE Location: 68397-68775 bp Feature: domain Description: sulf_tusD_dsrE Location: 68397-68775 bp Feature: gene Location: 68802-69122 bp Ori: TGO03720.1 Feature: domain Description: sulf_tusC_dsrF Location: 68826-69108 bp Feature: domain Description: sulf_tusC_dsrF Location: 68826-69108 bp Feature: gene Location: 70086-70496 bp Ori: TGO03721.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 70170-70443 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 70170-70443 bp Feature: gene Location: 70523-72031 bp Ori: TGO03722.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 70529-71015 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 70529-71015 bp Feature: domain Description: GIIM Note: maturase Location: 71147-71378 bp Feature: domain Description: GIIM Note: maturase Location: 7114 7-71378 bp Feature: domain Description: HNHc Note: nucleases Location: 71591-71756 bp Feature: domain Description: HNHc Note: nucleases Location: 71591-71756 bp Feature: gene Location: 72356-73762 bp Ori: TGO03723.1 Feature: domain Description: AAA_35 Location: 72467-73094 bp Feature: domain Description: AAA_35 Location: 72467-73094 bp Feature: domain Description: PDDEXK_3 Location: 73454-73634 bp Feature: domain Description: PDDEXK_3 Location: 73454-73634 bp Feature: gene Location: 74218-74526 bp Ori: TGO03724.1 Feature: domain Description: AAA15 Location: 74236-74362 bp Feature: domain Description: AAA15 Location: 74236-74362 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT sulf_tusD_dsrE (TIGR03012), sulf_tusC_dsrF (TIGR03010), RVT-GII, GIIM (pfam08388), HNHc (smart00507), AAA_35 (pfam14516), PDDEXK_3 (pfam13366), AAA15 (COG1106)

Seq: JSZA02000005.1 Candidatus Thiomargarita nelsonii isolate Hydrate Ridge NODE_63_length_104092_cov_115.065_ID_125, whole genome shotgun sequence (104092 bp)
Overview 1 RT 1: 1-3831 bp Neighborhood of RT #1 [1, 4418] RVT-GII GIIM HNHc UvrD AAA_35 Feature: gene Location: 1-1314 bp Ori: TGO03662.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 70-301 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 70-301 bp Feature: domain Description: GIIM Note: maturase Location: 433-664 bp Feature: domain Description: GIIM Note: maturase Location: 433-664 bp Feature: domain Description: HNHc Note: nucleases Location: 880-1042 bp Feature: domain Description: HNHc Note: nucleases Location: 880-1042 bp Feature: gene Location: 1586-2788 bp Ori: KHD08176.2 Feature: domain Description: UvrD Location: 1592-2768 bp Feature: domain Description: UvrD Location: 15 92-2768 bp Feature: gene Location: 2823-4418 bp Ori: KHD08175.1 Feature: domain Description: AAA_35 Location: 2877-3831 bp Feature: domain Description: AAA_35 Location: 2877-3831 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), HNHc (smart00507), UvrD (COG0210), AAA_35 (pfam14516)

Seq: JSZA02000135.1 Candidatus Thiomargarita nelsonii isolate Hydrate Ridge NODE_480_length_16954_cov_97.7459_ID_959, whole genome shotgun sequence (16954 bp)
Overview 1 RT 1: 10833-11928 bp Neighborhood of RT #1 [10833, 11928] RVT_N RVT-GII Feature: gene Location: 10833-11108 bp Ori: KHD05121.1 Feature: domain Description: RVT_N Location: 10839-10974 bp Feature: domain Description: RVT_N Location: 10839-10974 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 11040-11097 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 11040-11097 bp Feature: gene Location: 11108-11290 bp Feature: gene Location: 11602-11928 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII

Seq: JSZA02000147.1 Candidatus Thiomargarita nelsonii isolate Hydrate Ridge NODE_484_length_16748_cov_132.445_ID_967, whole genome shotgun sequence (16748 bp)
Overview 1 RT 1: 969-5045 bp Neighborhood of RT #1 [969, 5188] PRK08208 RVT_N RVT-GII GIIM SkfB SkfB Feature: gene Location: 969-2270 bp Ori: KHD07597.1 Feature: domain Description: PRK08208 Location: 990-2262 bp Feature: domain Description: PRK08208 Location: 990-2262 bp Feature: gene Location: 2290-3999 bp Ori: KHD07598.1 Feature: domain Description: RVT_N Location: 2407-2590 bp Feature: domain Description: RVT_N Location: 2407-2590 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2671-3274 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2671-3274 bp Feature: domain Description: GIIM Note: maturase Location: 3418-3637 bp Feature: domain Description: GIIM Note: maturase Location: 3418-3637 bp Feature: gene Location: 3996-4343 bp Feature: gene Location: 4358-5188 bp Ori: TGO02380.1 Feature: domain Description: SkfB Location: 4388-4643 bp Feature: domain Description: SkfB Location: 4388-4643 bp Feature: domain Description: SkfB Location: 4823-5045 bp Feature: domain Description: SkfB Location: 4823-5045 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK08208 (coproporphyrinogen III oxidase family protein), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), SkfB (COG0535)

Seq: JSZA02000047.1 Candidatus Thiomargarita nelsonii isolate Hydrate Ridge NODE_225_length_42635_cov_95.4227_ID_449, whole genome shotgun sequence (42635 bp)
Overview 1 RT 1: 29232-40814 bp Neighborhood of RT #1 [29232, 40894] RE_ApaLI RVT_N RVT-GII RVT-GII GIIM HNHc ParAB_family dcm NorE_like COX4_pro RVT-GII Intron_maturas2 HNHc Feature: gene Location: 29232-29777 bp Ori: TGO03035.1 Feature: domain Description: RE_ApaLI Location: 29235-29712 bp Feature: domain Description: RE_ApaLI Location: 29235-29712 bp Feature: gene Location: 30705-30911 bp Feature: gene Location: 30980-31627 bp Ori: TGO03032.1 Feature: domain Description: RVT_N Location: 31007-31235 bp Feature: domain Description: RVT_N Location: 31007-31235 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 31301-31574 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 31301-31574 bp Feature: gene Location: 31654-33147 bp Ori: TGO03033.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 31657-32131 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 31657-32131 bp Feature: domain Description: GIIM Note: maturase Location: 32263-32494 bp Feature: domain Description: GIIM Note: maturase Location: 32263-32494 bp Feature: domain Description: HNHc Note: nucleases Location: 32710-32872 bp Feature: domain Description: HNHc Note: nucleases Location: 32710-32872 bp Feature: gene Location: 34414-35472 bp Ori: KHD08546.1 Feature: domain Description: ParAB_family Location: 34423-35164 bp Feature: domain Description: ParAB_family Location: 34423-35164 bp Feature: gene Location: 35704-36840 bp Ori: TGO03034.1 Feature: domain Description: dcm Location: 35716-36730 bp Feature: domain Description: dcm Location: 35716-36730 bp Feature: gene Location: 37455-38039 bp Ori: KHD08548.1 Feature: domain Description: NorE_like Location: 37488-38034 bp Feature: domain Description: NorE_like Location: 37488-38034 bp Feature: gene Location: 38049-38312 bp Ori: KHD08549.1 Feature: domain Description: COX4_pro Location: 38076-38283 bp Feature: domain Description: COX4_pro Location: 38076-38283 bp Feature: gene Location: 39077-40894 bp Ori: KHD08550.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 39344-40142 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 39344-40142 bp Feature: domain Description: Intron_maturas2 Location: 40220-40517 bp Feature: domain Description: Intron_maturas2 Location: 40220-40517 bp Feature: domain Description: HNHc Note: nucleases Location: 40643-40814 bp Feature: domain Description: HNHc Note: nucleases Location: 40643-40814 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RE_ApaLI (pfam09499), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507), ParAB_family (cd02042), dcm (TIGR00675), NorE_like (cd02862), COX4_pro (pfam03626), Intron_maturas2 (pfam01348)

Seq: JSZA02000058.1 Candidatus Thiomargarita nelsonii isolate Hydrate Ridge NODE_241_length_39555_cov_117.291_ID_481, whole genome shotgun sequence (2845 bp)
Overview 1 RT 1: 1-2845 bp Neighborhood of RT #1 [1, 2845] RVT_N RVT-GII Feature: gene Location: 1-492 bp Ori: TGN99993.1 Feature: domain Description: RVT_N Location: 19-256 bp Feature: domain Description: RVT_N Location: 19 -256 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 328-490 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 328-490 bp Feature: gene Location: 1653-2845 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII

Seq: JSZA02000110.1 Candidatus Thiomargarita nelsonii isolate Hydrate Ridge NODE_393_length_21768_cov_114.591_ID_785, whole genome shotgun sequence (21768 bp)
Overview 1 RT 1: 1733-9994 bp Neighborhood of RT #1 [1733, 10014] NorD Cytochrome_CBB3 Cytochrom_D1 RVT_N RVT-GII Cytochrome_CBB3 Cytochrom_D1 Feature: gene Location: 1733-3571 bp Ori: KHD10123.1 Feature: domain Description: NorD Location: 1739-3560 bp Feature: domain Description: NorD Location: 1739-3560 bp Feature: gene Location: 3654-5417 bp Ori: TGO02566.1 Feature: domain Description: Cytochrome_CBB3 Location: 3897-4113 bp Feature: domain Description: Cytochrome_CBB3 Location: 3897-4113 bp Feature: domain Description: Cytochrom_D1 Location: 4224-5400 bp Feature: domain Description: Cytochrom_D1 Location: 4224-5400 bp Feature: gene Location: 6093-6746 bp Ori: TGO02568.1 Feature: domain Description: RVT_N Location: 6111-6354 bp Feature: domain Description: RVT_N Location: 6111-6354 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6420-6693 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6420 -6693 bp Feature: gene Location: 8553-8873 bp Ori: KHD11777.2 Feature: domain Description: Cytochrome_CBB3 Location: 8646-8835 bp Feature: domain Description: Cytochrome_CBB3 Location: 8646-8835 bp Feature: gene Location: 8863-10014 bp Ori: KHD11771.1 Feature: domain Description: Cytochrom_D1 Location: 8956-9994 bp Feature: domain Description: Cytochrom_D1 Location: 8956-9994 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT NorD (COG4548), Cytochrome_CBB3 (pfam13442), Cytochrom_D1 (pfam02239), RVT_N (pfam13655), RVT-GII