myRT

myRT report for GCA_000786775.1_ASM78677v1

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Seq: JRYO01000118.1 Candidatus Scalindua brodae isolate RU1 SCABRO_contig000118, whole genome shotgun sequence (21329 bp)
Overview 1 RT 1: 15663-21264 bp Neighborhood of RT #1 [15663, 21264] Avd_like RVT-DGRs MutS_I UvrA Feature: gene Location: 15663-16013 bp Ori: KHE92583.1 Feature: domain Description: Avd_like Location: 15690-15999 bp Feature: domain Description: Avd_like Location: 1 5690-1 5999 bp Feature: gene Location: 16010-16132 bp Feature: gene Location: 16830-17864 bp Ori: KHE92585.1 Gene: mutS Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 16842-17250 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 1 6842-1 7250 bp Feature: domain Description: MutS_I Location: 17562-17787 bp Feature: domain Description: MutS_I Location: 1 7562-1 7787 bp Feature: gene Location: 17985-20897 bp Ori: KHE92586.1 Gene: uvrA Feature: domain Description: UvrA Location: 17991-20895 bp Feature: domain Description: UvrA Location: 1 7991 -20895 bp Feature: gene Location: 20971-21264 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Avd_like (cd16376), RVT-DGRs, MutS_I (pfam01624), UvrA (COG0178)

Seq: JRYO01000185.1 Candidatus Scalindua brodae isolate RU1 SCABRO_contig000185, whole genome shotgun sequence (24274 bp)
Overview 1 RT 1: 3184-12620 bp Neighborhood of RT #1 [3184, 13009] Cas2_I_II_III RVT-CRISPR GIIM Cas1_I-II-III cold TIGR03986 RAMPs TIGR03986 Feature: gene Location: 3184-3459 bp Ori: KHE91655.1 Feature: domain Description: Cas2_I_II_III Location: 3193-3403 bp Feature: domain Description: Cas2 _I_II_III Location: 3193-3403 bp Feature: gene Location: 3521-3718 bp Feature: gene Location: 3806-6112 bp Ori: KHE91657.1 Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 4016-4640 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 4016-4640 bp Feature: domain Description: GIIM Note: maturase Location: 4697-4892 bp Feature: domain Description: GIIM Note: maturase Location: 4697-4892 bp Feature: domain Description: Cas1_I-II-III Location: 5108-6077 bp Feature: domain Description: Cas1_I-II-III Location: 5108-6077 bp Feature: gene Location: 7708-7917 bp Ori: KHE91658.1 Feature: domain Description: cold Location: 7747-7861 bp Feature: domain Description: cold Location: 7747-7861 bp Feature: gene Location: 7856-13009 bp Ori: KHE91659.1 Feature: domain Description: TIGR03986 Location: 9101-9299 bp Feature: domain Description: TIGR03986 Location: 9101-92 99 bp Feature: domain Description: RAMPs Location: 10010-10430 bp Feature: domain Description: RAMPs Location: 10010-10430 bp Feature: domain Description: TIGR03986 Location: 10640-12620 bp Feature: domain Description: TIGR03986 Location: 10640-12 62 0 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Cas2_I_II_III (cl11442), RVT-CRISPR, GIIM (pfam08388), Cas1_I-II-III (cl00656), cold (LOAD_cold), TIGR03986 (CRISPR-associated protein), RAMPs (pfam03787)

Seq: JRYO01000195.1 Candidatus Scalindua brodae isolate RU1 SCABRO_contig000195, whole genome shotgun sequence (28518 bp)
Overview 1 RT 1: 14685-18989 bp Neighborhood of RT #1 [14685, 18994] Fur RVT-GII HTH_XRE S24_LexA-like aroK Feature: gene Location: 14685-15161 bp Ori: KHE91469.1 Feature: domain Description: Fur Location: 14748-15153 bp Feature: domain Description: Fur Location: 14748-15153 bp Feature: gene Location: 15231-15521 bp Feature: gene Location: 15747-17084 bp Ori: KHE91471.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 16026-16713 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 16026-16713 bp Feature: gene Location: 17757-18431 bp Ori: KHE91472.1 Feature: domain Description: HTH_XRE Location: 17793-17940 bp Feature: domain Description: HTH_XRE Location: 17793 -17940 bp Feature: domain Description: S24_LexA-like Location: 18153-18390 bp Feature: domain Description: S24_LexA-like Location: 18153 -183 90 bp Feature: gene Location: 18494-18994 bp Ori: KHE91473.1 Gene: aroK Feature: domain Description: aroK Location: 18500-18989 bp Feature: domain Description: aroK Location: 18500-18989 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Fur (COG0735), RVT-GII, HTH_XRE (smart00530), S24_LexA-like (cd06529), aroK (PRK05057)

Seq: JRYO01000248.1 Candidatus Scalindua brodae isolate RU1 SCABRO_contig000248, whole genome shotgun sequence (3707 bp)
Overview 1 RT 1: 1190-3707 bp Neighborhood of RT #1 [1190, 3707] Cas2_I_II_III Cas1_I-II-III RVT-CRISPR group_II_RT_mat Feature: gene Location: 1190-1504 bp Ori: KHE90672.1 Feature: domain Description: Cas2_I_II_III Location: 1238-1469 bp Feature: domain Description: Cas2_I_II_III Location: 1238-14 69 bp Feature: gene Location: 1501-2502 bp Ori: KHE90673.1 Feature: domain Description: Cas1_I-II-III Location: 1510-2467 bp Feature: domain Description: Cas1_I-II-III Location: 1510-24 67 bp Feature: gene Location: 2536-3234 bp Ori: KHE90674.1 Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 2539-3106 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 2539-3106 bp Feature: gene Location: 3186-3467 bp Ori: KHE90675.1 Feature: domain Description: group_II_RT_mat Note: maturase Location: 3225-3414 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 3225-34 14 bp Feature: gene Location: 3439-3707 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Cas2_I_II_III (cl11442), Cas1_I-II-III (cl00656), RVT-CRISPR, group_II_RT_mat (TIGR04416)

Seq: JRYO01000017.1 Candidatus Scalindua brodae isolate RU1 SCABRO_contig000017, whole genome shotgun sequence (7170 bp)
Overview 1 RT 1: 3-2785 bp Neighborhood of RT #1 [3, 2802] integrase_gron Y1_Tnp Bac_DnaA_C RVT-GII HigB_toxin Feature: gene Location: 3-185 bp Ori: KHE94071.1 Feature: domain Description: integrase_gron Location: 9-159 bp Feature: domain Description: integrase_gron Location: 9-15 9 bp Feature: gene Location: 217-1227 bp Ori: KHE94072.1 Feature: domain Description: Y1_Tnp Location: 253-580 bp Feature: domain Description: Y1_Tnp Location: 25 3-5 80 bp Feature: domain Description: Bac_DnaA_C Location: 955-1207 bp Feature: domain Description: Bac_DnaA_C Location: 95 5 -1207 bp Feature: gene Location: 1251-1496 bp Ori: KHE94073.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1287-1470 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1287-1470 bp Feature: gene Location: 2287-2415 bp Feature: gene Location: 2515-2802 bp Ori: KHE94075.1 Feature: domain Description: HigB_toxin Location: 2575-2785 bp Feature: domain Description: HigB_toxin Location: 25 75 -2785 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT integrase_gron (TIGR02249), Y1_Tnp (pfam01797), Bac_DnaA_C (smart00760), RVT-GII, HigB_toxin (pfam09907)

Seq: JRYO01000048.1 Candidatus Scalindua brodae isolate RU1 SCABRO_contig000048, whole genome shotgun sequence (2065 bp)
Overview 1 RT 1: 520-2065 bp Neighborhood of RT #1 [520, 2065] RVT-GII GIIM Feature: gene Location: 520-1848 bp Ori: KHE93562.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 811-1459 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 811-1459 bp Feature: domain Description: GIIM Note: maturase Location: 1528-1750 bp Feature: domain Description: GIIM Note: maturase Location: 1528-1750 bp Feature: gene Location: 1812-2065 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)