myRT

myRT report for GCA_000787775.1_ASM78777v1

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Seq: BBPM01000098.1 Streptacidiphilus carbonis DNA, contig: scaffold00098, whole genome shotgun sequence (18675 bp)
Overview 1 RT 1: 11084-16166 bp Neighborhood of RT #1 [11084, 16273] RVT-GII GIIM PinE Zn_ribbon_recom excise excise excise excise DUF5372 Feature: gene Location: 11084-11299 bp Feature: gene Location: 11502-11915 bp Feature: gene Location: 12147-13145 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 12150-12771 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 21 50-1 2771 bp Feature: domain Description: GIIM Note: maturase Location: 12852-13083 bp Feature: domain Description: GIIM Note: maturase Location: 1 2852-1 3083 bp Feature: gene Location: 13153-15885 bp Feature: domain Description: PinE Location: 13204-13774 bp Feature: domain Description: PinE Location: 1 3204-1 3774 bp Feature: domain Description: Zn_ribbon_recom Location: 14146-14314 bp Feature: domain Description: Zn_ribbon_recom Location: 1 41 46-1 431 4 bp Feature: domain Description: excise Location: 15007-15115 bp Feature: domain Description: excise Location: 1 5007-1 51 1 5 bp Feature: domain Description: excise Location: 15220-15337 bp Feature: domain Description: excise Location: 1 5220-1 5337 bp Feature: domain Description: excise Location: 15442-15556 bp Feature: domain Description: excise Location: 1 5442-1 5556 bp Feature: domain Description: excise Location: 15673-15763 bp Feature: domain Description: excise Location: 1 5673-1 5763 bp Feature: gene Location: 16019-16273 bp Feature: domain Description: DUF5372 Location: 16028-16166 bp Feature: domain Description: DUF5372 Location: 1 6028-1 61 66 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), PinE (COG1961), Zn_ribbon_recom (pfam13408), excise (TIGR01764), DUF5372 (pfam17342)

Seq: BBPM01000024.1 Streptacidiphilus carbonis DNA, contig: scaffold00024, whole genome shotgun sequence (123570 bp)
Overview 1 RT 1: 17766-23701 bp Neighborhood of RT #1 [17766, 23754] YcjR HppD CAD1 RVT-GII MarR MFS_MMR_MDR_like Feature: gene Location: 17766-19607 bp Feature: domain Description: YcjR Location: 17769-18549 bp Feature: domain Description: YcjR Location: 17769-18549 bp Feature: domain Description: HppD Location: 18567-19581 bp Feature: domain Description: HppD Location: 18567-19581 bp Feature: gene Location: 19988-21028 bp Feature: domain Description: CAD1 Location: 20006-21014 bp Feature: domain Description: CAD1 Location: 2 0006-2 1014 bp Feature: gene Location: 21239-21658 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 21248-21536 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 12 48-2 1536 bp Feature: gene Location: 21755-22213 bp Feature: domain Description: MarR Location: 21833-22190 bp Feature: domain Description: MarR Location: 2 1833-2 2 190 bp Feature: gene Location: 22300-23754 bp Feature: domain Description: MFS_MMR_MDR_like Location: 22378-23701 bp Feature: domain Description: MFS_MMR_MDR_like Location: 2 2 378-2 3701 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT YcjR (COG1082), HppD (COG3185), CAD1 (cd05283), RVT-GII, MarR (pfam01047), MFS_MMR_MDR_like (cd17504)