myRT

myRT report for GCA_000788005.1_ASM78800v1

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Seq: JSZJ01000023.1 (237666 bp)
Overview 1 RT 1: 112839-121469 bp Neighborhood of RT #1 [112839, 121474] FimC FimD RVT-UG4 PRK09692 YqgA Feature: gene Location: 112839-113603 bp Ori: KHF53271.1 Feature: domain Description: FimC Location: 112884-113586 bp Feature: domain Description: FimC Location: 1 1 2884-1 1 3586 bp Feature: gene Location: 113650-116244 bp Ori: KHF53272.1 Gene: fim_5 Feature: domain Description: FimD Location: 113692-116233 bp Feature: domain Description: FimD Location: 1 1 3692-1 1 6233 bp Feature: gene Location: 116241-118322 bp Ori: KHF53273.1 Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 116652-117096 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 1 1 6652-1 1 7096 bp Feature: gene Location: 119080-119943 bp Ori: KHF53274.1 Gene: int_2 Feature: domain Description: PRK09692 Location: 119104-119941 bp Feature: domain Description: PRK09692 Location: 1 1 91 04-1 1 9941 bp Feature: gene Location: 120761-121474 bp Ori: KHF53275.1 Gene: yqgA_1 Feature: domain Description: YqgA Location: 120767-121469 bp Feature: domain Description: YqgA Location: 1 20767-1 21 469 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT FimC (COG3121), FimD (COG3188), RVT-UG4, PRK09692 (Integrase; provisional), YqgA (COG1811)

Seq: JSZJ01000036.1 (14509 bp)
Overview 1 RT 1: 8764-14469 bp Neighborhood of RT #1 [8764, 14477] ArdC RVT-GII PRK10276 umuC Feature: gene Location: 8764-9195 bp Feature: gene Location: 9675-10640 bp Ori: KHF51688.1 Feature: domain Description: ArdC Location: 9801-10635 bp Feature: domain Description: ArdC Location: 9801-10635 bp Feature: gene Location: 11110-12594 bp Ori: KHF51689.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 11512-12202 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 11512 -12 2 02 bp Feature: gene Location: 13003-13434 bp Ori: KHF51690.1 Feature: domain Description: PRK10276 Location: 13054-13417 bp Feature: domain Description: PRK102 76 Location: 13054-13417 bp Feature: gene Location: 13434-14477 bp Ori: KHF51691.1 Gene: umuC_4 Feature: domain Description: umuC Location: 13437-14469 bp Feature: domain Description: umuC Location: 13437-14469 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT ArdC (COG4227), RVT-GII, PRK10276 (translesion error-prone DNA polymerase V autoproteolytic subunit), umuC (PRK03609)

Seq: JSZJ01000039.1 (2272 bp)
Overview 1 RT 1: 657-1935 bp Neighborhood of RT #1 [657, 2180] RVT-GII GIIM Feature: gene Location: 657-2180 bp Ori: KHF51540.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 930-1662 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 93 0-1662 bp Feature: domain Description: GIIM Note: maturase Location: 1737-1935 bp Feature: domain Description: GIIM Note: maturase Location: 173 7-193 5 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: JSZJ01000011.1 (14355 bp)
Overview 1 RT 1: 4435-9472 bp Neighborhood of RT #1 [4435, 9477] Antirestrict RVT-GII PRK10276 umuC Feature: gene Location: 4435-4860 bp Ori: KHF55224.1 Feature: domain Description: Antirestrict Location: 4570-4858 bp Feature: domain Description: Antirestrict Location: 4 570-4 858 bp Feature: gene Location: 5380-5610 bp Feature: gene Location: 5844-7301 bp Ori: KHF55226.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6171-6909 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6171-6909 bp Feature: gene Location: 7781-8206 bp Ori: KHF55227.1 Feature: domain Description: PRK10276 Location: 7784-8192 bp Feature: domain Description: PRK10276 Location: 7784 -8192 bp Feature: gene Location: 8206-9477 bp Ori: KHF55228.1 Gene: umuC_3 Feature: domain Description: umuC Location: 8209-9472 bp Feature: domain Description: umuC Location: 8209-94 72 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Antirestrict (pfam03230), RVT-GII, PRK10276 (translesion error-prone DNA polymerase V autoproteolytic subunit), umuC (PRK03609)