myRT

myRT report for GCA_000789725.1_AZPAE14941

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Seq: JTRA01000096.1 (1861 bp)
Overview 1 RT 1: 65-1860 bp Neighborhood of RT #1 [65, 1860] RVT-GII GIIM Feature: gene Location: 65-1333 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 278-935 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 278-935 bp Feature: domain Description: GIIM Note: maturase Location: 1013-1235 bp Feature: domain Description: GIIM Note: maturase Location: 1 01 3-1 235 bp Feature: gene Location: 1684-1860 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: JTRA01000025.1 (58506 bp)
Overview 1 RT 1: 23616-28842 bp Neighborhood of RT #1 [23616, 28847] TnpB_IS66 LZ_Tnp_IS66 zf-IS66 DDE_Tnp_IS66 RVT_N RVT-GII GIIM DDE_Tnp_IS66_C Tar Feature: gene Location: 23616-23906 bp Feature: domain Description: TnpB_IS66 Location: 23619-23877 bp Feature: domain Description: TnpB_IS66 Location: 2 3619-2 3877 bp Feature: gene Location: 23970-25274 bp Feature: domain Description: LZ_Tnp_IS66 Location: 24072-24285 bp Feature: domain Description: LZ_Tnp_IS66 Location: 2 4072 -2 42 85 bp Feature: domain Description: zf-IS66 Location: 24312-24438 bp Feature: domain Description: zf-IS66 Location: 2 4312 -2 4438 bp Feature: domain Description: DDE_Tnp_IS66 Location: 24486-25254 bp Feature: domain Description: DDE_Tnp_IS66 Location: 2 4486-2 52 54 bp Feature: gene Location: 25829-27502 bp Feature: RT Description: RVT_N Location: 25874-26117 bp Feature: RT Description: RVT_N Location: 2 5874-2 6117 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 26162-26798 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 6162 -2 6798 bp Feature: domain Description: GIIM Note: maturase Location: 26852-27083 bp Feature: domain Description: GIIM Note: maturase Location: 2 6852 -2 7083 bp Feature: gene Location: 27682-27825 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 27688-27799 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 2 7688-2 7799 bp Feature: gene Location: 27954-28847 bp Feature: domain Description: Tar Location: 27984-28842 bp Feature: domain Description: Tar Location: 2 7984-2 8842 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT TnpB_IS66 (pfam05717), LZ_Tnp_IS66 (pfam13007), zf-IS66 (pfam13005), DDE_Tnp_IS66 (pfam03050), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), DDE_Tnp_IS66_C (pfam13817), Tar (COG0840)

Seq: JTRA01000046.1 (272170 bp)
Overview 1 RT 1: 68480-78779 bp Neighborhood of RT #1 [68480, 78790] PRK05658 PBP2_BvgS_HisK_like PRK09776 sensory_box PAS_9 PRK10060 RVT_N RVT-GII GIIM HNH COG3177 Feature: gene Location: 68480-70333 bp Feature: domain Description: PRK05658 Location: 68492-70331 bp Feature: domain Description: PRK05658 Location: 68492-703 3 1 bp Feature: gene Location: 70440-74177 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 70548-71205 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 70548-71205 bp Feature: domain Description: PRK09776 Location: 71418-71739 bp Feature: domain Description: PRK09776 Location: 71418-7173 9 bp Feature: domain Description: sensory_box Location: 71748-72108 bp Feature: domain Description: sensory_box Location: 71748-72108 bp Feature: domain Description: PAS_9 Location: 72156-72462 bp Feature: domain Description: PAS_9 Location: 72156-72462 bp Feature: domain Description: PRK10060 Location: 72480-74127 bp Feature: domain Description: PRK10060 Location: 72480-74127 bp Feature: gene Location: 75258-76943 bp Feature: RT Description: RVT_N Location: 75315-75555 bp Feature: RT Description: RVT_N Location: 753 15-75555 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 75603-76239 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 75603 -7623 9 bp Feature: domain Description: GIIM Note: maturase Location: 76293-76524 bp Feature: domain Description: GIIM Note: maturase Location: 76293 -76524 bp Feature: domain Description: HNH Note: nucleases Location: 76776-76914 bp Feature: domain Description: HNH Note: nucleases Location: 76776-76914 bp Feature: gene Location: 77246-77407 bp Feature: gene Location: 77669-78790 bp Feature: domain Description: COG3177 Location: 77687-78779 bp Feature: domain Description: COG3 177 Location: 77687-78779 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK05658 (RNA polymerase sigma factor RpoD; Validated), PBP2_BvgS_HisK_like (cd01007), PRK09776 (putative diguanylate cyclase; Provisional), sensory_box (TIGR00229), PAS_9 (pfam13426), PRK10060 (cyclic di-GMP phosphodiesterase), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNH (pfam01844)
COG3177 (Fic family protein )