myRT

myRT report for GCA_000789785.1_AZPAE14850

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Seq: JTUL01000020.1 (234598 bp)
Overview 1 RT 1: 140156-150889 bp Neighborhood of RT #1 [140156, 150891] NERD COG3177 RVT_N RVT-GII GIIM HNH PBP2_BvgS_HisK_like PRK09776 PAS PRK10060 PRK05658 Feature: gene Location: 140156-140491 bp Feature: domain Description: NERD Location: 140255-140426 bp Feature: domain Description: NERD Location: 1 40255-1 40426 bp Feature: gene Location: 140584-141705 bp Feature: domain Description: COG3177 Location: 140602-141694 bp Feature: domain Description: COG31 77 Location: 1 40602-1 41 694 bp Feature: gene Location: 142428-144113 bp Feature: RT Description: RVT_N Location: 142485-142725 bp Feature: RT Description: RVT_N Location: 1 42485-1 42725 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 142773-143409 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 42773-1 43409 bp Feature: domain Description: GIIM Note: maturase Location: 143463-143694 bp Feature: domain Description: GIIM Note: maturase Location: 1 43463-1 43694 bp Feature: domain Description: HNH Note: nucleases Location: 143946-144084 bp Feature: domain Description: HNH Note: nucleases Location: 1 43946-1 44084 bp Feature: gene Location: 145194-148931 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 145302-145959 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 1 45302-1 45959 bp Feature: domain Description: PRK09776 Location: 146172-146643 bp Feature: domain Description: PRK09776 Location: 1 461 72-1 46643 bp Feature: domain Description: PAS Location: 146688-147225 bp Feature: domain Description: PAS Location: 1 46688-1 47225 bp Feature: domain Description: PRK10060 Location: 147234-148881 bp Feature: domain Description: PRK1 0060 Location: 1 47234-1 48881 bp Feature: gene Location: 149038-150891 bp Feature: domain Description: PRK05658 Location: 149050-150889 bp Feature: domain Description: PRK05658 Location: 1 49050-1 50889 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT NERD (pfam08378), COG3177 (Fic family protein ), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNH (pfam01844), PBP2_BvgS_HisK_like (cd01007), PRK09776 (putative diguanylate cyclase; Provisional), PAS (smart00091), PRK10060 (cyclic di-GMP phosphodiesterase)
PRK05658 (RNA polymerase sigma factor RpoD; Validated)