myRT

myRT report for GCA_000790025.1_AZPAE14858

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Seq: JTUE01000084.1 (11550 bp)
Overview 1 RT 1: 1-7659 bp Neighborhood of RT #1 [1, 7659] RhsA RVT-UG1 AAA_23 Smc Feature: gene Location: 1-501 bp Feature: domain Description: RhsA Location: 4-298 bp Feature: domain Description: RhsA Location: 4-298 bp Feature: gene Location: 654-1037 bp Feature: gene Location: 1389-5210 bp Feature: RT Description: RVT-UG1 Note: UG1 RT Location: 2013-2490 bp Feature: RT Description: RVT-UG1 Note: UG1 RT Location: 201 3-2490 bp Feature: gene Location: 5291-7168 bp Feature: domain Description: AAA_23 Location: 5366-6179 bp Feature: domain Description: AAA_23 Location: 5366-61 79 bp Feature: domain Description: Smc Location: 6356-6668 bp Feature: domain Description: Smc Location: 6356-6668 bp Feature: gene Location: 7165-7659 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RhsA (COG3209), RVT-UG1, AAA_23 (pfam13476), Smc (COG1196)

Seq: JTUE01000007.1 (97500 bp)
Overview 1 RT 1: 1806-13862 bp Neighborhood of RT #1 [1806, 13864] HTH_XRE int RVT_N RVT-GII GIIM HNH PBP2_BvgS_HisK_like PRK09776 PAS PRK10060 PRK05658 Feature: gene Location: 1806-2330 bp Feature: domain Description: HTH_XRE Location: 2112-2226 bp Feature: domain Description: HTH_XRE Location: 2 112 -2 2 2 6 bp Feature: gene Location: 2335-3405 bp Feature: domain Description: int Location: 2338-3355 bp Feature: domain Description: int Location: 2 338-3355 bp Feature: gene Location: 5401-7086 bp Feature: domain Description: RVT_N Location: 5458-5698 bp Feature: domain Description: RVT_N Location: 5458-5698 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5746-6382 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5746-6382 bp Feature: domain Description: GIIM Note: maturase Location: 6436-6667 bp Feature: domain Description: GIIM Note: maturase Location: 6436-6667 bp Feature: domain Description: HNH Note: nucleases Location: 6919-7057 bp Feature: domain Description: HNH Note: nucleases Location: 6919-7057 bp Feature: gene Location: 8167-11904 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 8275-8932 bp Feature: domain Description: PBP2 _BvgS_HisK_like Location: 82 75-8932 bp Feature: domain Description: PRK09776 Location: 9145-9616 bp Feature: domain Description: PRK09776 Location: 9145-9616 bp Feature: domain Description: PAS Location: 9673-10198 bp Feature: domain Description: PAS Location: 9673-10198 bp Feature: domain Description: PRK10060 Location: 10207-11854 bp Feature: domain Description: PRK10060 Location: 102 07-11854 bp Feature: gene Location: 12011-13864 bp Feature: domain Description: PRK05658 Location: 12023-13862 bp Feature: domain Description: PRK05658 Location: 12 02 3-13862 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_XRE (smart00530), int (PHA02601), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNH (pfam01844), PBP2_BvgS_HisK_like (cd01007), PRK09776 (putative diguanylate cyclase; Provisional), PAS (smart00091), PRK10060 (cyclic di-GMP phosphodiesterase)
PRK05658 (RNA polymerase sigma factor RpoD; Validated)