myRT

myRT report for GCA_000790185.1_AZPAE14865

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Seq: JTTX01000009.1 (33395 bp)
Overview 1 RT 1: 7290-13172 bp Neighborhood of RT #1 [7290, 13172] IS5 RVT-GII GIIM RVT_N RVT-GII GIIM IS5 Feature: gene Location: 7290-7418 bp Feature: gene Location: 7583-8122 bp Feature: domain Description: IS5 Location: 7772-8099 bp Feature: domain Description: IS5 Location: 7772-8099 bp Feature: gene Location: 8615-9883 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8828-9485 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8828-9485 bp Feature: domain Description: GIIM Note: maturase Location: 9563-9785 bp Feature: domain Description: GIIM Note: maturase Location: 9563-9785 bp Feature: gene Location: 9942-10142 bp Feature: gene Location: 10559-12064 bp Feature: RT Description: RVT_N Location: 10640-10865 bp Feature: RT Description: RVT_N Location: 1 0640-1 0865 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 10916-11558 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 091 6-1 1 558 bp Feature: domain Description: GIIM Note: maturase Location: 11609-11843 bp Feature: domain Description: GIIM Note: maturase Location: 1 1 609-1 1 843 bp Feature: gene Location: 12185-12595 bp Feature: domain Description: IS5 Location: 12191-12569 bp Feature: domain Description: IS5 Location: 1 21 91 -1 2569 bp Feature: gene Location: 12984-13172 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), IS5 (COG3039)

Seq: JTTX01000020.1 (228033 bp)
Overview 1 RT 1: 143180-153488 bp 2 RT 2: 169746-178596 bp Neighborhood of RT #1 [143180, 153490] COG3177 RVT_N RVT-GII GIIM HNH PBP2_BvgS_HisK_like PRK09776 PAS PRK10060 PRK05658 Neighborhood of RT #2 [169746, 178625] PRK10770 LptD RVT_N RVT-GII YkfC HNH COG3178 NTP_transferase_like_1 Feature: gene Location: 143180-144301 bp Feature: domain Description: COG3177 Location: 143198-144290 bp Feature: domain Description: COG3177 Location: 143198-1442 90 bp Feature: gene Location: 144563-144724 bp Feature: gene Location: 145027-146712 bp Feature: RT Description: RVT_N Location: 145084-145324 bp Feature: RT Description: RVT_N Location: 145084-14532 4 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 145372-146008 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 145372 -146008 bp Feature: domain Description: GIIM Note: maturase Location: 146062-146293 bp Feature: domain Description: GIIM Note: maturase Location: 146062 -1462 93 bp Feature: domain Description: HNH Note: nucleases Location: 146545-146683 bp Feature: domain Description: HNH Note: nucleases Location: 146545-146683 bp Feature: gene Location: 147793-151530 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 147901-148558 bp Feature: domain Description: PBP2 _BvgS_HisK_like Location: 147901-148558 bp Feature: domain Description: PRK09776 Location: 148771-149242 bp Feature: domain Description: PRK09776 Location: 148771-1492 42 bp Feature: domain Description: PAS Location: 149287-149824 bp Feature: domain Description: PAS Location: 1492 87-14982 4 bp Feature: domain Description: PRK10060 Location: 149833-151480 bp Feature: domain Description: PRK10060 Location: 149833-151480 bp Feature: gene Location: 151637-153490 bp Feature: domain Description: PRK05658 Location: 151649-153488 bp Feature: domain Description: PRK05658 Location: 151649-153488 bp Feature: gene Location: 169746-170960 bp Feature: domain Description: PRK10770 Location: 169758-170952 bp Feature: domain Description: PRK10770 Location: 169758-170952 bp Feature: gene Location: 171019-173820 bp Feature: domain Description: LptD Location: 171214-173806 bp Feature: domain Description: LptD Location: 1712 14-173806 bp Feature: gene Location: 173953-175665 bp Feature: RT Description: RVT_N Location: 174010-174253 bp Feature: RT Description: RVT_N Location: 174010-1742 53 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 174298-174934 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1742 98-174934 bp Feature: domain Description: YkfC Location: 175141-175294 bp Feature: domain Description: YkfC Location: 175141-1752 94 bp Feature: domain Description: HNH Note: nucleases Location: 175471-175609 bp Feature: domain Description: HNH Note: nucleases Location: 175471-175609 bp Feature: gene Location: 176938-177954 bp Feature: domain Description: COG3178 Location: 176941-177940 bp Feature: domain Description: COG3178 Location: 176941-177940 bp Feature: gene Location: 177951-178625 bp Feature: domain Description: NTP_transferase_like_1 Location: 177957-178596 bp Feature: domain Description: NTP_transferase_like_1 Location: 177957-178596 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3177 (Fic family protein ), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNH (pfam01844), PBP2_BvgS_HisK_like (cd01007), PRK09776 (putative diguanylate cyclase; Provisional), PAS (smart00091), PRK10060 (cyclic di-GMP phosphodiesterase), PRK05658 (RNA polymerase sigma factor RpoD; Validated)
PRK10770 (peptidyl-prolyl cis-trans isomerase SurA; Provisional), LptD (COG1452), YkfC (COG3344), COG3178 (Predicted phosphotransferase, aminoglycoside/choline kinase (APH/ChoK) family ), NTP_transferase_like_1 (cd06422)