myRT

myRT report for GCA_000790325.1_AZPAE14871

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Seq: JTTR01000070.1 (2579 bp)
Overview 1 RT 1: 160-2297 bp Neighborhood of RT #1 [160, 2297] RVT_N RVT-GII GIIM HNHc Feature: gene Location: 160-1863 bp Feature: RT Description: RVT_N Location: 217-460 bp Feature: RT Description: RVT_N Location: 21 7-460 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 505-1141 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 505-1 1 41 bp Feature: domain Description: GIIM Note: maturase Location: 1195-1426 bp Feature: domain Description: GIIM Note: maturase Location: 1 1 95-1 426 bp Feature: domain Description: HNHc Note: nucleases Location: 1660-1807 bp Feature: domain Description: HNHc Note: nucleases Location: 1 660-1 807 bp Feature: gene Location: 1956-2297 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507)

Seq: JTTR01000127.1 (4608 bp)
Overview 1 RT 1: 2538-4199 bp Neighborhood of RT #1 [2538, 4606] nicotinamidase_related RVT-GII GIIM Feature: gene Location: 2538-3101 bp Feature: domain Description: nicotinamidase_related Location: 2565-3024 bp Feature: domain Description: nicotinamidase_related Location: 2 565-302 4 bp Feature: gene Location: 3214-3411 bp Feature: gene Location: 3431-4606 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3452-3914 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3452 -3914 bp Feature: domain Description: GIIM Note: maturase Location: 3971-4199 bp Feature: domain Description: GIIM Note: maturase Location: 3971-4199 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT nicotinamidase_related (cd01014), RVT-GII, GIIM (pfam08388)

Seq: JTTR01000073.1 (13033 bp)
Overview 1 RT 1: 33-3763 bp Neighborhood of RT #1 [33, 3763] DDE_Tnp_Tn3 RVT-GII GIIM Feature: gene Location: 33-1430 bp Feature: domain Description: DDE_Tnp_Tn3 Location: 189-1365 bp Feature: domain Description: DDE_Tnp_Tn3 Location: 189-13 65 bp Feature: gene Location: 1657-3078 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2014-2629 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2014-2629 bp Feature: domain Description: GIIM Note: maturase Location: 2686-2899 bp Feature: domain Description: GIIM Note: maturase Location: 2686-2899 bp Feature: gene Location: 3228-3398 bp Feature: gene Location: 3551-3763 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), DDE_Tnp_Tn3 (pfam01526)

Seq: JTTR01000011.1 (139814 bp)
Overview 1 RT 1: 71616-81913 bp Neighborhood of RT #1 [71616, 81924] PRK05658 PBP2_BvgS_HisK_like PRK09776 PAS PRK10060 RVT_N RVT-GII GIIM HNH COG3177 Feature: gene Location: 71616-73469 bp Feature: domain Description: PRK05658 Location: 71628-73467 bp Feature: domain Description: PRK05658 Location: 71628-734 67 bp Feature: gene Location: 73576-77313 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 73684-74341 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 73684 -74 34 1 bp Feature: domain Description: PRK09776 Location: 74554-75025 bp Feature: domain Description: PRK09776 Location: 74 554 -75025 bp Feature: domain Description: PAS Location: 75115-75607 bp Feature: domain Description: PAS Location: 75115-75607 bp Feature: domain Description: PRK10060 Location: 75616-77263 bp Feature: domain Description: PRK10060 Location: 75616-77263 bp Feature: gene Location: 78394-80079 bp Feature: RT Description: RVT_N Location: 78451-78691 bp Feature: RT Description: RVT_N Location: 784 51-78691 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 78739-79375 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 78739-79375 bp Feature: domain Description: GIIM Note: maturase Location: 79429-79660 bp Feature: domain Description: GIIM Note: maturase Location: 794 29-79660 bp Feature: domain Description: HNH Note: nucleases Location: 79912-80050 bp Feature: domain Description: HNH Note: nucleases Location: 79912-80050 bp Feature: gene Location: 80407-80544 bp Feature: gene Location: 80803-81924 bp Feature: domain Description: COG3177 Location: 80821-81913 bp Feature: domain Description: COG3177 Location: 80821-81913 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK05658 (RNA polymerase sigma factor RpoD; Validated), PBP2_BvgS_HisK_like (cd01007), PRK09776 (putative diguanylate cyclase; Provisional), PAS (smart00091), PRK10060 (cyclic di-GMP phosphodiesterase), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNH (pfam01844), COG3177 (Fic family protein )